Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Marty Soehnlen"'
Autor:
Heather M. Blankenship, Stephen E. Dietrich, Elizabeth Burgess, Jason Wholehan, Marty Soehnlen, Shannon D. Manning
Publikováno v:
Microorganisms, Vol 11, Iss 5, p 1298 (2023)
Shiga toxin-producing Escherichia coli (STEC) causes high frequencies of foodborne infections worldwide and has been linked to numerous outbreaks each year. Pulsed-field gel electrophoresis (PFGE) has been the gold standard for surveillance until the
Externí odkaz:
https://doaj.org/article/d104ac9d290f4f0bae00ecdb179108bf
Autor:
Heather M. Blankenship, Rebekah E. Mosci, Stephen Dietrich, Elizabeth Burgess, Jason Wholehan, Karen McWilliams, Karen Pietrzen, Scott Benko, Ted Gatesy, James. T. Rudrik, Marty Soehnlen, Shannon D. Manning
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Abstract Non-O157 STEC are increasingly linked to foodborne infections, yet little is known about the diversity and molecular epidemiology across locations. Herein, we used whole genome sequencing to examine genetic variation in 894 isolates collecte
Externí odkaz:
https://doaj.org/article/ec1bd50d931c4a2e861316dde5ad54a0
Publikováno v:
Standards in Genomic Sciences, Vol 12, Iss 1, Pp 1-10 (2017)
Abstract Elizabethkingia meningoseptica is an emerging, healthcare-associated pathogen causing a high mortality rate in immunocompromised patients. We report the draft genome sequence of E. meningoseptica Em3, isolated from sputum from a patient with
Externí odkaz:
https://doaj.org/article/b7f02276a36b40cf8a05d518d23fee2d
Autor:
Shicheng Chen, Marty Soehnlen, Jochen Blom, Nicolas Terrapon, Bernard Henrissat, Edward D Walker
Publikováno v:
PLoS ONE, Vol 14, Iss 10, p e0222648 (2019)
Three human clinical isolates of bacteria (designated strains Em1, Em2 and Em3) had high average nucleotide identity (ANI) to Elizabethkingia meningoseptica. Their genome sizes (3.89, 4.04 and 4.04 Mb) were comparable to those of other Elizabethkingi
Externí odkaz:
https://doaj.org/article/17e2a70a6aa94927925a754d66dd7e12
Publikováno v:
Microbial Genomics. 9
Whole-genome sequencing has become a preferred method for studying bacterial plasmids, as it is generally assumed to capture the entire genome. However, long-read genome assemblers have been shown to sometimes miss plasmid sequences – an issue that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::95aa838dcb3d85201fed9135378427dd
https://doi.org/10.1099/mgen.0.001024
https://doi.org/10.1099/mgen.0.001024
Autor:
E. A. Adam, Christina Harrington, Vincent R. Hill, Stephen Dietrich, Marty Soehnlen, Jevon McFadden, Caroline Castillo, Sarah A. Collier, Mateusz P. Karwowski, Eija Trees, Jennifer R. Cope, Hannah E. Reses, Grete E. Wilt, Katie Fullerton, R. Paul McClung, Ashley Miller, James W. Collins, Jonathan S. Yoder
Publikováno v:
Am J Public Health
Objectives. To investigate a shigellosis outbreak in Genesee County, Michigan (including the City of Flint), and Saginaw County, Michigan, in 2016 and address community concerns about the role of the Flint water system. Methods. We met frequently wit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd07e8341afa674b73321b80f0f5b3ea
https://doi.org/10.2105/ajph.2020.305577
https://doi.org/10.2105/ajph.2020.305577
Autor:
Emily T. Martin, Adam S. Lauring, JoLynn P. Montgomery, Andrew L. Valesano, Marisa C. Eisenberg, Danielle Sheen, Jennifer Nord, Robert D. Ernst, Lindsey Y. Mortenson, Riccardo Valdez, Yashar Niknafs, Darryl Conway, Sami F. Rifat, Natasha Bagdasarian, Sarah Lyon-Callo, Jim Collins, Heather Blankenship, Marty Soehnlen, Juan Marquez
The first cluster of SARS-CoV-2 cases with lineage B.1.1.7 in the state of Michigan was identified through intensive university-led surveillance sampling and targeted sequencing. A collaborative investigation and response was conducted by the local a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3c6ee32353d6e841a7ab0f4581a53388
https://doi.org/10.1101/2022.01.04.22268758
https://doi.org/10.1101/2022.01.04.22268758
Autor:
Brenda M. Brennan, Keith S Kaye, Oryan Henig, Steven H. Marshall, Marty Soehnlen, Robert A. Bonomo, Susan D. Rudin, Laura J. Rojas, Michael A. Bachman, Carey Dombecki, John P. Mills, Kelly L. Jones, Laraine Washer, Amanda Valyko
Publikováno v:
Infection Control & Hospital Epidemiology. 40:1059-1062
Clinical Enterobacteriacae isolates with a colistin minimum inhibitory concentration (MIC) ≥4 mg/L from a United States hospital were screened for the mcr-1 gene using real-time polymerase chain reaction (RT-PCR) and confirmed by whole-genome seque
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3213e2c2eae37c03070edbec4bff2185
https://doi.org/10.1017/ice.2019.177
https://doi.org/10.1017/ice.2019.177
Autor:
Munegowda Koralur, Cheng Y Chen, Allan Pillay, Brunie White, Kevin Pettus, Kai-Hua Chi, Joey Stringer, Chukwuemika Aroh, Trivikram Dasu, Sanjib Bhattacharyya, Keith Perkins, Jenny Chen, Diana Riner, Marty Soehnlen, Weiping Cao, Anne M Gaynor, Ellen N Kersh
Publikováno v:
Sexually transmitted infections. 98(6)
ObjectiveTo evaluate the field performance of a multiplex PCR (M-PCR) assay for detection of herpes simplex virus (HSV)-1 and HSV-2, Treponema pallidum (T. pallidum) and Haemophilus ducreyi (H. ducreyi) in genital ulcer disease (GUD) specimens.Method
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4588678eb2a1e731832c503dbf5de8fe
https://pubmed.ncbi.nlm.nih.gov/34873027
https://pubmed.ncbi.nlm.nih.gov/34873027
Autor:
Elizabeth A. Burgess, Shannon D. Manning, Jason Wholehan, Karen Pietrzen, Scott Benko, Rebekah E. Mosci, Heather M. Blankenship, Marty Soehnlen, Ted Gatesy, Karen McWilliams, Stephen Dietrich, James T. Rudrik
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Scientific Reports
Scientific Reports
Non-O157 STEC are increasingly linked to foodborne infections, yet little is known about the diversity and molecular epidemiology across locations. Herein, we used whole genome sequencing to examine genetic variation in 894 isolates collected from Mi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5adf262e9527296025d340a063483018
https://doi.org/10.1038/s41598-021-83775-z
https://doi.org/10.1038/s41598-021-83775-z