Complete Genome Sequence of Escherichia coli AS19, an Antibiotic-Sensitive Variant of E. coli Strain B REL606

Autor: Gilles P. van Wezel, Marten Boetzer, Stephen Douthwaite, Walter Pirovano, Nelson E. Arenas, Mariana Avalos

Publikováno v: Genome Announcements
Genome Announcements, 6(18). American Society for Microbiology
Avalos, M, Boetzer, M, Pirovano, W, Arenas, N E, Douthwaite, S & van Wezel, G P 2018, ' Complete Genome Sequence of Escherichia coli AS19, an Antibiotic-Sensitive Variant of E. coli Strain B REL606 ', Genome Announcements, vol. 6, no. 18, e00385-18 . https://doi.org/10.1128/genomeA.00385-18

The chemically mutagenized Escherichia coli strain AS19 was isolated on the basis of its enhanced sensitivity to different antibiotics, in particular to actinomycin. The strain was later modified to study rRNA modifications that confer antibiotic res

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67c45929eb2b206254b4d918183f0895
https://pubmed.ncbi.nlm.nih.gov/29724850

Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population

Autor: Vitantonio Pantaleo, Marten Boetzer, Laura Miozzi, Walter Pirovano

Publikováno v: Frontiers in Microbiology, Vol 5 (2015)
Frontiers in Microbiology
Frontiers in microbiology 5 (2015): 790. doi:10.3389/fmicb.2014.00790
info:cnr-pdr/source/autori:Pirovano W., Miozzi L., Boetzer M., Pantaleo V./titolo:Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population./doi:10.3389%2Ffmicb.2014.00790/rivista:Frontiers in microbiology/anno:2015/pagina_da:790/pagina_a:/intervallo_pagine:790/volume:5

Over the past years deep sequencing experiments have opened novel doors to ?reconstruct viral populations in a high-throughput and cost-effective manner. Currently a ?substantial number of studies have been performed which employ Next Generation Sequ

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::966ee8c950bfc436889f7bec32f984ed

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system

Autor: Ryan J.R. McCleary, Mark Yandell, Wolfgang Wüster, A. P. Jason de Koning, Diego Calderon, Asad S. Hyder, Harald M. E. Kerkkamp, Jessica M. Logan, R. Manjunatha Kini, Denis Duboule, Walter Pirovano, Guido van den Thillart, Anthony E. Woods, Libia Sanz, Freek J. Vonk, José M. C. Ribeiro, Rachel B. Currier, Nicholas R. Casewell, Alysha Heimberg, Christiaan V. Henkel, Herman P. Spaink, Robert A. Harrison, Ron P. Dirks, Hans J. Jansen, Todd A. Castoe, David D. Pollock, Isabel Guerreiro, Rutger A. Vos, Camila Renjifo, David Salgado, Davinia Pla, Edwina McGlinn, Jan W. Arntzen, Marten Boetzer, Juan J. Calvete, Michael K. Richardson

Publikováno v: Europe PubMed Central
Proceedings of the National Academy of Sciences
Proceedings of the National Academy of Sciences, 110(51), 20651-20656

Snakes are limbless predators, and many species use venom to help overpower relatively large, agile prey. Snake venoms are complex protein mixtures encoded by several multilocus gene families that function synergistically to cause incapacitation. To

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ead0bb18eefd47610ed5a3af7706c776
https://hdl.handle.net/1887/55328

NCBI-compliant genome submissions: tips and tricks to save time and money: Table 1

Autor: Walter Pirovano, Martijn F.L. Derks, Marten Boetzer, Sandra Smit

Publikováno v: Briefings in Bioinformatics. :bbv104

Genome sequences nowadays play a central role in molecular biology and bioinformatics. These sequences are shared with the scientific community through sequence databases. The sequence repositories of the International Nucleotide Sequence Database Co

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https://doi.org/10.1093/bib/bbv104

Toward almost closed genomes with GapFiller

Autor: Walter Pirovano, Marten Boetzer

Publikováno v: Genome Biology

De novo assembly is a commonly used application of next-generation sequencing experiments. The ultimate goal is to puzzle millions of reads into one complete genome, although draft assemblies usually result in a number of gapped scaffold sequences. I

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a4af698dce63fd67672f96e8bfefa482
https://doi.org/10.1186/gb-2012-13-6-r56