Zobrazeno 1 - 10
of 19
pro vyhledávání: '"Martín Peralta-Gil"'
Autor:
David A. Velázquez-Ramírez, Ron Caspi, César Bonavides-Martínez, Suzanne M. Paley, Daniel Weaver, Peter D. Karp, Markus Krummenacker, Julio Collado-Vides, Luis Muñiz-Rascado, Anamika Kothari, Alberto Santos-Zavaleta, Carol A. Fulcher, Richard Billington, Quang Ong, Martín Peralta-Gil, Mario Latendresse, Socorro Gama-Castro, Ian T. Paulsen, Amanda Mackie, Pallavi Subhraveti, Ingrid M. Keseler
Publikováno v:
Nucleic Acids Research
EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their function a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::446e62cbf5fb3512be82b049b095cc16
https://doi.org/10.1093/nar/gkw1003
https://doi.org/10.1093/nar/gkw1003
Publikováno v:
BMC Genomics
Background The goal of most programs developed to find transcription factor binding sites (TFBSs) is the identification of discrete sequence motifs that are significantly over-represented in a given set of sequences where a transcription factor (TF)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40ae5e5886aa533f7bce0b1e1bd6b328
https://doi.org/10.1186/s12864-016-3025-3
https://doi.org/10.1186/s12864-016-3025-3
Autor:
Alfredo José Hernández-Álvarez, Maricela Olvera, Gerardo Salgado-Osorio, Shirley Alquicira-Hernández, Kevin Alquicira-Hernández, Martín Peralta-Gil, Socorro Gama-Castro, Liliana Porrón-Sotelo, Verónica Jiménez-Jacinto, Jair S. García-Sotelo, Lucia Pannier, Verena Weiss, Julio Collado-Vides, Araceli M. Huerta, Alejandra Medina-Rivera, Heladia Salgado, Alejandra López-Fuentes, Leticia Vega-Alvarado, Alberto Santos-Zavaleta, Luis Muñiz-Rascado, César Bonavides-Martínez, Hilda Solano-Lira, Yalbi I. Balderas-Martínez, Aurora Labastida, Irma Martínez-Flores, Enrique Morett, Víctor Del Moral-Chávez
Publikováno v:
Nucleic Acids Research
This article summarizes our progress with RegulonDB (http://regulondb.ccg.unam.mx/) during the past 2 years. We have kept up-to-date the knowledge from the published literature regarding transcriptional regulation in Escherichia coli K-12. We have ma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8894714a8aa3b2aec2d1d4d02de2e849
https://doi.org/10.1093/nar/gks1201
https://doi.org/10.1093/nar/gks1201
Autor:
Enrique Morett, Irma Martínez-Flores, Liliana Porrón-Sotelo, Alfredo Mendoza-Vargas, Alberto Santos-Zavaleta, Verena Weiss, Blanca Taboada, Verónica Jiménez-Jacinto, Ruth Martínez-Adame, Araceli M. Huerta, Julio Collado-Vides, Hilda Solano-Lira, Leonardo Collado-Torres, Luis Muñiz-Rascado, Juan Miranda-Ríos, Heladia Salgado, Alejandra López-Fuentes, Maricela Olvera, Ricardo Grande, Kevin Alquicira-Hernández, Leticia Olvera, Leticia Vega-Alvarado, Jair S. García-Sotelo, Shirley Alquicira-Hernández, Martín Peralta-Gil, César Bonavides-Martínez, Alejandra Medina-Rivera, Socorro Gama-Castro
Publikováno v:
Nucleic Acids Research
RegulonDB (http://regulondb.ccg.unam.mx/) is the primary reference database of the best-known regulatory network of any free-living organism, that of Escherichia coli K-12. The major conceptual change since 3 years ago is an expanded biological conte
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b26b8bdc1a8454ce072db6df58b8185b
https://doi.org/10.1093/nar/gkq1110
https://doi.org/10.1093/nar/gkq1110
Autor:
César Bonavides-Martínez, Suzanne M. Paley, Ingrid M. Keseler, Socorro Gama-Castro, Laura M. Nolan, Markus Krummenacker, Alberto Santos-Zavaleta, D. Aaron Johnson, Martín Peralta-Gil, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp, Alexander G. Shearer, Julio Collado-Vides
Publikováno v:
Nucleic acids research, vol 37, iss Database issue
D470
D464
Nucleic Acids Research
D470
D464
Nucleic Acids Research
EcoCyc (http://EcoCyc.org) provides a comprehensive encyclopedia of Escherichia coli biology. EcoCyc integrates information about the genome, genes and gene products; the metabolic network; and the regulatory network of E. coli. Recent EcoCyc develop
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d01eb0c125d776abb42b9ac36e7515db
https://doi.org/10.1093/nar/gkn751
https://doi.org/10.1093/nar/gkn751
Autor:
Ingrid M. Keseler, John B Ingraham, Peter D. Karp, Ian T. Paulsen, Martín Peralta-Gil, César Bonavides-Martínez, Markus Krummenacker, Mario Latendresse, Julio Collado-Vides, Socorro Gama-Castro, Suzanne M. Paley, Alberto Santos-Zavaleta, Mónica I Peñaloza-Spínola, Alexander G. Shearer
Publikováno v:
Nucleic Acids Research
The annotation of the Escherichia coli K-12 genome in the EcoCyc database is one of the most accurate, complete and multidimensional genome annotations. Of the 4460 E. coli genes, EcoCyc assigns biochemical functions to 76%, and 66% of all genes had
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::07a3923f3ee7ad0a7623c0ea786fe471
http://europepmc.org/articles/PMC2190727
http://europepmc.org/articles/PMC2190727
Autor:
Delfino Garcia‐Alonso, Martín Peralta-Gil, Heladia Salgado, César Bonavides-Martínez, Alberto Santos-Zavaleta, Julio Collado-Vides, Socorro Gama-Castro, Fabiola Sánchez-Solano, Verónica Jiménez-Jacinto, Agustino Martínez-Antonio, Edgar Díaz-Peredo
Publikováno v:
Scopus-Elsevier
RegulonDB is the primary database of the major international maintained curation of original literature with experimental knowledge about the elements and interactions of the network of transcriptional regulation in Escherichia coli K-12. This includ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fe0d045599aff9d490ab788d1a3c70e3
Autor:
Irma Martínez-Flores, Edgar Díaz-Peredo, Alberto Santos-Zavaleta, Heladia Salgado, Martín Peralta-Gil, Juan Segura-Salazar, César Bonavides-Martínez, Agustino Martínez-Antonio, Verónica Jiménez-Jacinto, Julio Collado-Vides, Fabiola Sánchez-Solano, Socorro Gama-Castro
Publikováno v:
Scopus-Elsevier
Nucleic Acids Research
Nucleic Acids Research
RegulonDB is the internationally recognized reference database of Escherichia coli K-12 offering curated knowledge of the regulatory network and operon organization. It is currently the largest electronically-encoded database of the regulatory networ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2266d0f7c87a777daa6fce5bb03dc992
Autor:
Martín Peralta-Gil, Peter D. Karp, Agustino Martínez-Antonio, Heladia Salgado, Mónica I Peñaloza-Spínola, Julio Collado-Vides, Alberto Santos-Zavaleta, Socorro Gama-Castro
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 7, Iss 1, p 5 (2006)
BMC Bioinformatics, Vol 7, Iss 1, p 5 (2006)
Background Escherichia coli is the model organism for which our knowledge of its regulatory network is the most extensive. Over the last few years, our project has been collecting and curating the literature concerning E. coli transcription initiatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::43a42f8d0808d2d4ebc42d51a68cad7a
Autor:
Aya Kubo, César Bonavides-Martínez, Suzanne M. Paley, Socorro Gama-Castro, Peter D. Karp, Anamika Kothari, Verena Weiss, Ingrid M. Keseler, Ian T. Paulsen, Deepika Weerasinghe, Luis Muñiz-Rascado, Martín Peralta-Gil, Markus Krummenacker, Daniel Weaver, Araceli M. Huerta, Alberto Santos-Zavaleta, Imke Schröder, Robert P. Gunsalus, Amanda Mackie, Julio Collado-Vides, Carol A. Fulcher, Pallavi Subhraveti
Publikováno v:
EcoSal Plus. 6
EcoCyc is a bioinformatics database available at EcoCyc.org that describes the genome and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of the project is to describe the complete molecular catalog of the E. coli cell,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::040de5cda4ac5116a924f30abf18f56f
https://doi.org/10.1128/ecosalplus.esp-0009-2013
https://doi.org/10.1128/ecosalplus.esp-0009-2013