Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.

Autor: Gauglitz JM; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., West KA; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Bittremieux W; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Williams CL; Beckman Center for Conservation Research, San Diego Zoo Wildlife Alliance, Escondido, CA, USA., Weldon KC; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Panitchpakdi M; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Di Ottavio F; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA., Aceves CM; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Brown E; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA., Sikora NC; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Jarmusch AK; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Martino C; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA., Tripathi A; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Meehan MJ; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Dorrestein K; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Shaffer JP; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Coras R; Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA., Vargas F; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA., Goldasich LD; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Schwartz T; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Bryant M; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Humphrey G; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Johnson AJ; Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, MN, USA., Spengler K; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA., Belda-Ferre P; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Diaz E; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Zhu Q; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Elijah EO; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Wang M; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Sprecher KE; Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA.; Department of Population Health Sciences, University of Wisconsin-Madison, Madison, WI, USA., Vargas-Robles D; Servicio Autónomo Centro Amazónico de Investigación y Control de Enfermedades Tropicales Simón Bolívar, Puerto Ayacucho, Amazonas, Venezuela., Withrow D; Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA., Ackermann G; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Herrera L; Department of Pediatrics, Billings Clinic, Billings, MT, USA., Bradford BJ; Department of Animal Science, Michigan State University, East Lansing, MI, USA., Marques LMM; Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil., Amaral JG; Multidisciplinary Health Institute, Federal University of Bahia, Vitória da Conquista, Bahia, Brazil., Silva RM; NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil., Veras FP; Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil., Cunha TM; Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil., Oliveira RDR; Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil., Louzada-Junior P; Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil., Mills RH; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Department of Pharmacology, University of California San Diego, La Jolla, CA, USA., Piotrowski PK; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Servetas SL; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Da Silva SM; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Jones CM; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Lin NJ; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Lippa KA; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Jackson SA; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Daouk RK; Department of Psychiatry and Behavioral Sciences, Duke University School of Medicine, Durham, Durham, NC, USA.; Department of Medicine, Duke University, Durham, NC, USA.; Duke Institute of Brain Sciences, Duke University, Durham, NC, USA., Galasko D; Department of Neurosciences, University of California San Diego, La Jolla, CA, USA., Dulai PS; Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA., Kalashnikova TI; Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA., Wittenberg C; Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA., Terkeltaub R; Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA.; San Diego VA Healthcare System, San Diego, CA, USA., Doty MM; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Division of Neonatology, Department of Pediatrics, Kapi'olani Medical Center for Women and Children, John A. Burns School of Medicine, Honolulu, Hawaii, USA., Kim JH; Division of Neonatology, Perinatal Institute, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA., Rhee KE; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Beauchamp-Walters J; Division of Pediatric Hospital Medicine, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Wright KP Jr; Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA., Dominguez-Bello MG; Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences; Rutgers, The State University of New Jersey, New Brunswick, NJ, USA., Manary M; Department of Pediatrics, Washington University, St. Louis, MO, USA., Oliveira MF; Department of Medicine, University of California San Diego, La Jolla, CA, USA., Boland BS; Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA., Lopes NP; NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil., Guma M; Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA., Swafford AD; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Dutton RJ; Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA., Knight R; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. rknight@ucsd.edu.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. rknight@ucsd.edu.; Department of Medicine, University of California San Diego, La Jolla, CA, USA. rknight@ucsd.edu.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. rknight@ucsd.edu.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA. rknight@ucsd.edu., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA. pdorrestein@health.ucsd.edu.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. pdorrestein@health.ucsd.edu.; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. pdorrestein@health.ucsd.edu.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. pdorrestein@health.ucsd.edu.; Department of Pharmacology, University of California San Diego, La Jolla, CA, USA. pdorrestein@health.ucsd.edu.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2023 Nov; Vol. 41 (11), pp. 1656.

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.

Autor: Shaffer JP; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Nothias LF; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Thompson LR; Northern Gulf Institute, Mississippi State University, Starkville, MS, USA.; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, FL, USA., Sanders JG; Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA., Salido RA; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA., Couvillion SP; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Brejnrod AD; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Lejzerowicz F; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Haiminen N; IBM Research, T.J. Watson Research Center, Yorktown Heights, NY, USA., Huang S; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Lutz HL; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Zhu Q; School of Life Sciences, Arizona State University, Tempe, AZ, USA.; Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA., Martino C; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.; Bioinformatics and Systems Biology Program, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Morton JT; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA., Karthikeyan S; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Nothias-Esposito M; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Dührkop K; Chair for Bioinformatics, Friedrich Schiller University, Jena, Germany., Böcker S; Chair for Bioinformatics, Friedrich Schiller University, Jena, Germany., Kim HW; College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, Gyeonggi-do, Korea., Aksenov AA; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Chemistry, University of Connecticut, Storrs, CT, USA., Bittremieux W; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science, University of Antwerp, Antwerp, Belgium., Minich JJ; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Bryant MM; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Sanders K; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Schwartz T; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Humphrey G; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Vásquez-Baeza Y; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Tripathi A; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Parida L; IBM Research, T.J. Watson Research Center, Yorktown Heights, NY, USA., Carrieri AP; IBM Research Europe, Daresbury, UK., Beck KL; IBM Research, Almaden Research Center, San Jose, CA, USA., Das P; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., González A; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Ladau J; Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Karst SM; Department of Virus and Microbiological Special Diagnostics, Statens Serum Institute, Copenhagen, Denmark., Albertsen M; Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark., Ackermann G; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., DeReus J; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Thomas T; Centre for Marine Science and Innovation, School of Biological, Earth and Environmental Science, The University of New South Wales, Sydney, New South Wales, Australia., Petras D; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA.; Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen, Tübingen, Baden-Württemberg, Germany., Shade A; Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA., Stegen J; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Song SJ; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Metz TO; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Swafford AD; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Jansson JK; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Gilbert JA; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.

Publikováno v: Nature microbiology [Nat Microbiol] 2022 Dec; Vol. 7 (12), pp. 2128-2150. Date of Electronic Publication: 2022 Nov 28.

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.

Autor: Minich JJ; Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Ali F; Division of Gastroenterology, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Belda-Ferre P; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Chiang L; Division of Infectious Diseases, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Shaffer JP; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Carpenter CS; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Gilbert J; Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Allard SM; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Allen EE; Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA., Sweeney DA; Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Internal Medicine, University of California San Diego, La Jolla, CA, USA., Swafford AD; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA. dasweeney@health.ucsd.edu.

Publikováno v: Microbiome [Microbiome] 2021 Jan 22; Vol. 9 (1), pp. 25. Date of Electronic Publication: 2021 Jan 22.

Severe acute respiratory coronavirus virus 2 (SARS-CoV-2) screening among symptom-free healthcare workers.

Autor: Demmer RT; Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, Minnesota.; Department of Epidemiology, Columbia University, New York, New York., Ulrich AK; Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, Minnesota., Wiggen TD; Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, Minnesota., Strickland A; Division of Environmental Health Sciences, School of Public Health, University of Minnesota, Minneapolis, Minnesota., Naumchik BM; Medical School, University of Minnesota, Minneapolis, Minnesota., Kulasingam S; Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, Minnesota., Stovitz SD; Department of Family Medicine and Community Health, Medical School, University of Minnesota, Minneapolis, Minnesota., Marotz C; Department of Pediatrics, University of California San Diego, La Jolla, California., Belda-Ferre P; Department of Pediatrics, University of California San Diego, La Jolla, California., Humphrey G; Department of Pediatrics, University of California San Diego, La Jolla, California., De Hoff P; Department of Obstetrics, Gynecology, and Reproductive Sciences, Sanford Consortium for Regenerative Medicine, University of California, San Diego, California., Laurent L; Department of Obstetrics, Gynecology, and Reproductive Sciences, Sanford Consortium for Regenerative Medicine, University of California, San Diego, California., Kline S; Division of Infectious Diseases and International Medicine, Medical School, University of Minnesota, Minneapolis, Minnesota., Knight R; Department of Pediatrics, University of California San Diego, La Jolla, California.; Department of Computer Science & Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, California.; Department of Bioengineering, University of California San Diego, La Jolla, California.; Center for Microbiome Innovation, University of California San Diego, La Jolla, California.

Publikováno v: Infection control and hospital epidemiology [Infect Control Hosp Epidemiol] 2022 May; Vol. 43 (5), pp. 657-660. Date of Electronic Publication: 2021 Mar 12.

Emergence of an early SARS-CoV-2 epidemic in the United States.

Autor: Zeller M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: zellerm@scripps.edu., Gangavarapu K; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: gkarthik@scripps.edu., Anderson C; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Smither AR; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA., Vanchiere JA; Department of Pediatrics, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA 71130, USA., Rose R; BioInfoExperts LLC, Thibodaux, Louisiana, USA., Snyder DJ; Department of Microbiology and Molecular Genetics, University of Pittsburgh, School of Medicine, Pittsburgh, PA 15219, USA; Center for Evolutionary Biology and Medicine, University of Pittsburgh, Pittsburgh, PA 15219, USA., Dudas G; Gothenburg Global Biodiversity Centre (GGBC), Gothenburg, Sweden., Watts A; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Canada; Bluedot, Toronto, Canada., Matteson NL; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Robles-Sikisaka R; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Marshall M; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, MD, USA., Feehan AK; Ochsner Clinic Foundation, New Orleans, Louisiana, USA., Sabino-Santos G Jr; Department of Tropical Medicine, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA 70112, USA; Centre for Virology Research, Ribeirão Preto Medical School, University of Sao Paulo, Ribeirao Preto, SP 14049900, Brazil., Bell-Kareem AR; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA., Hughes LD; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Alkuzweny M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Snarski P; Heart and Vascular Institute, John W. Deming Department of Medicine, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Department of Physiology, Tulane University School of Medicine, New Orleans, LA 70112, USA., Garcia-Diaz J; Ochsner Clinic Foundation, New Orleans, Louisiana, USA., Scott RS; Department of Microbiology and Immunology, Louisiana State University Health Science Center Shreveport, Shreveport, LA 71103, USA., Melnik LI; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA., Klitting R; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., McGraw M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Belda-Ferre P; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA., DeHoff P; Department of Obstetrics, Gynecology, and Reproductive Science, University of California, San Diego, La Jolla, CA 92037, USA., Sathe S; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA; Stem Cell Program, University of California San Diego, La Jolla, CA 92093, USA., Marotz C; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA; Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Nolan DJ; BioInfoExperts LLC, Thibodaux, Louisiana, USA., Drouin AC; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Department of Physiology, Tulane University School of Medicine, New Orleans, LA 70112, USA., Genemaras KJ; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Bioinnovation Program, Tulane University, New Orleans, LA 70118, USA., Chao K; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Bioinnovation Program, Tulane University, New Orleans, LA 70118, USA., Topol S; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Spencer E; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Nicholson L; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Aigner S; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA; Stem Cell Program, University of California San Diego, La Jolla, CA 92093, USA; Institute for Genomic Medicine, University of California, San Diego, La Jolla, California, USA., Yeo GW; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA; Stem Cell Program, University of California San Diego, La Jolla, CA 92093, USA; Institute for Genomic Medicine, University of California, San Diego, La Jolla, California, USA., Farnaes L; Rady Children's Institute for Genomic Medicine, San Diego, CA 92123, USA; Rady Children's Hospital, San Diego, CA 92123, USA., Hobbs CA; Rady Children's Institute for Genomic Medicine, San Diego, CA 92123, USA; Rady Children's Hospital, San Diego, CA 92123, USA., Laurent LC; Department of Obstetrics, Gynecology, and Reproductive Science, University of California, San Diego, La Jolla, CA 92037, USA., Knight R; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA; Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA; Department of Bioengineering, University of California San Diego, La Jolla, California, USA., Hodcroft EB; Biozentrum, University of Basel, Basel, Switzerland., Khan K; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Canada; Bluedot, Toronto, Canada; Department of Medicine, University of Toronto, Toronto, Canada., Fusco DN; Department of Tropical Medicine, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA 70112, USA; Department of Medicine, Tulane University School of Medicine, 1430 Tulane Avenue, New Orleans, LA 70114, USA., Cooper VS; Department of Microbiology and Molecular Genetics, University of Pittsburgh, School of Medicine, Pittsburgh, PA 15219, USA; Center for Evolutionary Biology and Medicine, University of Pittsburgh, Pittsburgh, PA 15219, USA., Lemey P; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Belgium; Global Virology Network., Gardner L; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, MD, USA., Lamers SL; BioInfoExperts LLC, Thibodaux, Louisiana, USA., Kamil JP; Department of Microbiology and Immunology, Louisiana State University Health Science Center Shreveport, Shreveport, LA 71103, USA., Garry RF; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Zalgen Labs LLC, Germantown, MD, USA., Suchard MA; Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA; Scripps Research Translational Institute, La Jolla, CA 92037, USA. Electronic address: andersen@scripps.edu.

Publikováno v: Cell [Cell] 2021 Sep 16; Vol. 184 (19), pp. 4939-4952.e15. Date of Electronic Publication: 2021 Jul 27.