The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research [version 1; peer review: 2 approved]

Autor: David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutierrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquin Dopazo, Laura I. Furlong, Bo Gao, Leyla Garcia, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskošek, David Lloyd, Tomas Marques-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud

Publikováno v: F1000Research, Vol 9 (2020)

Copy number variations (CNVs) are major causative contributors both in the genesis of genetic diseases and human neoplasias. While “High-Throughput” sequencing technologies are increasingly becoming the primary choice for genomic screening analys

Externí odkaz: https://doaj.org/article/ce2c79f73a854618a434aa5e5c6bd672

Cortical stiffness of keratinocytes measured by lateral indentation with optical tweezers.

Autor: Špela Zemljič Jokhadar, Biljana Stojković, Marko Vidak, Tjaša Sorčan, Mirjana Liovic, Marcos Gouveia, Rui D M Travasso, Jure Derganc

Publikováno v: PLoS ONE, Vol 15, Iss 12, p e0231606 (2020)

Keratin intermediate filaments are the principal structural element of epithelial cells. Their importance in providing bulk cellular stiffness is well recognized, but their role in the mechanics of cell cortex is less understood. In this study, we th

Externí odkaz: https://doaj.org/article/47fb437627434f08a3cc0cf82ca08ff4

TiO

Autor: Jan, Gojznikar, Bogdan, Zdravković, Marko, Vidak, Brane, Leskošek, Polonca, Ferk

Publikováno v: International journal of molecular sciences. 23(20)

Nanoparticulate TiO

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::cb4d179d23e3385f9955ae42c04f0476
https://pubmed.ncbi.nlm.nih.gov/36293217

TiO2 Nanoparticles and Their Effects on Eukaryotic Cells: A Double-Edged Sword

Autor: Jan Gojznikar, Bogdan Zdravković, Marko Vidak, Brane Leskošek, Polonca Ferk

Publikováno v: International Journal of Molecular Sciences. 23:12353

Nanoparticulate TiO2 (TiO2 NPs) is a widely used material, whose potential toxicity towards eukaryotic cells has been addressed by multiple studies. TiO2 NPs are considered toxic due to their production of reactive oxygen species (ROS), which can, am

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f8764730b77c87f6c813607b2a2012f4
https://doi.org/10.3390/ijms232012353

A framework to assess the quality and impact of bioinformatics training across ELIXIR

Autor: Eija Korpelainen, Allegra Via, Marko Vidak, Brane Leskošek, Lee Larcombe, Louisa J. Bellis, Mateusz Kuzak, Loredana Le Pera, Patricia M. Palagi, Paula Martinez, Celia W.G. van Gelder, Sarah L. Morgan, Tuur Muyldermans, Jessica M. Lindvall, Gabriella Rustici, Kim T. Gurwitz, Hedi Peterson, Alexander Botzki, Roland Krause, Fotis Psomopoulos, Victoria Dominguez Del Angel, Balint L. Balint, Ståle Nygård, Diana Marek, Eva Alloza, Daniel Wibberg, Pedro Fernandes, Prakash Singh Gaur, Jure Dimec, Vojtech Spiwok

Publikováno v: PLoS Computational Biology
PLoS Computational Biology, Public Library of Science, 2020, 16 (7), pp.e1007976. ⟨10.1371/journal.pcbi.1007976⟩
PLOS computational biology (Online) 16 (2020). doi:10.1371/journal.pcbi.1007976
info:cnr-pdr/source/autori:Kim T. Gurwitz1, Prakash Singh Gaur2, Louisa J. Bellis1, Lee Larcombe3, Eva Alloza4, Balint Laszlo Balint5, Alexander Botzki6, Jure Dimec7, Victoria Dominguez del Angel8, Pedro L. Fernandes9, Eija Korpelainen10, Roland Krause11, Mateusz Kuzak12, Loredana Le Pera13, Brane Leskos?ek7, Jessica M. Lindvall14, Diana Marek15, Paula A. Martinez6, Tuur Muyldermans6, Ståle Nygård16, Patricia M. Palagi15, Hedi Peterson17, Fotis Psomopoulos18, Vojtech Spiwok19, Celia W. G. van Gelder12, Allegra Via20, Marko Vidak7, Daniel Wibberg21, Sarah L. Morgan2, Gabriella Rustici1*/titolo:A framework to assess the quality and impact of bioinformatics training across ELIXIR/doi:10.1371%2Fjournal.pcbi.1007976/rivista:PLOS computational biology (Online)/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume:16
PLoS computational biology, vol. 16, no. 7, pp. e1007976
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PLoS Computational Biology, Vol 16, Iss 7, p e1007976 (2020)
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ELIXIR is a pan-European intergovernmental organisation for life science that aims to coordinate bioinformatics resources in a single infrastructure across Europe; bioinformatics training is central to its strategy, which aims to develop a training c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9ad6decd27e6e5883e7325d46ecb73c0
https://hdl.handle.net/2117/331402