Zobrazeno 1 - 10
of 48
pro vyhledávání: '"Mark V Ivanov"'
Autor:
Daria D. Emekeeva, Tomiris T. Kusainova, Lev I. Levitsky, Elizaveta M. Kazakova, Mark V. Ivanov, Irina P. Olkhovskaya, Mikhail L. Kuskov, Alexey N. Zhigach, Nataliya N. Glushchenko, Olga A. Bogoslovskaya, Irina A. Tarasova
Publikováno v:
Agronomy, Vol 13, Iss 8, p 2134 (2023)
Image analysis is widely applied in plant science for phenotyping and monitoring botanic and agricultural species. Although a lot of software is available, tools integrating image analysis and statistical assessment of seedling growth in large groups
Externí odkaz:
https://doaj.org/article/df9b2b073c6a4b2289e9b2a977af084e
Autor:
Lev I. Levitsky, Mark V. Ivanov, Anton O. Goncharov, Anna A. Kliuchnikova, Julia A. Bubis, Anna A. Lobas, Elizaveta M. Solovyeva, Mikhail A. Pyatnitskiy, Ruslan K. Ovchinnikov, Mikhail S. Kukharsky, Tatiana E. Farafonova, Svetlana E. Novikova, Victor G. Zgoda, Irina A. Tarasova, Mikhail V. Gorshkov, Sergei A. Moshkovskii
Publikováno v:
Journal of Proteome Research.
The proteogenomic search pipeline developed in this work has been applied for re-analysis of 40 publicly available shotgun proteomic datasets from various human tissues comprising more than 8,000 individual LC-MS/MS runs, of which 5442 .raw data file
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40f00f3ab9bb6fce93dd4667c450a425
https://doi.org/10.1021/acs.jproteome.2c00740
https://doi.org/10.1021/acs.jproteome.2c00740
Current proteomics approaches rely almost exclusively on using positive ionization mode, which results in inefficient ionization of many acidic peptides. With an equal quantity of acidic and basic proteins and, correspondingly, the similar number for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::49959338a5c948d78a0c676965c73fd1
https://doi.org/10.1101/2023.03.06.530802
https://doi.org/10.1101/2023.03.06.530802
Autor:
Elizaveta M. Solovyeva, Julia A. Bubis, Irina A. Tarasova, Anna A. Lobas, Mark V. Ivanov, Alexey A. Nazarov, Ilya A. Shutkov, Mikhail V. Gorshkov
Publikováno v:
Biochemistry. Biokhimiia. 87(11)
Abstract Protein quantitation in tissue cells or physiological fluids based on liquid chromatography/mass spectrometry is one of the key sources of information on the mechanisms of cell functioning during chemotherapeutic treatment. Information on si
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::274937fdaf5b3b639703b03f8c0bf0f2
https://pubmed.ncbi.nlm.nih.gov/36509723
https://pubmed.ncbi.nlm.nih.gov/36509723
Autor:
Mark V. Ivanov, Julia A. Bubis, Vladimir Gorshkov, Irina A. Tarasova, Lev I. Levitsky, Elizaveta M. Solovyeva, Anastasiya V. Lipatova, Frank Kjeldsen, Mikhail V. Gorshkov
Publikováno v:
Analytical chemistry. 94(38)
Recently, we presented the DirectMS1 method of ultrafast proteome-wide analysis based on minute-long LC gradients and MS1-only mass spectra acquisition. Currently, the method provides the depth of human cell proteome coverage of 2500 proteins at 1% f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::83cfdd32f5c4eccd97527fd8d6a01e93
https://pubmed.ncbi.nlm.nih.gov/36094425
https://pubmed.ncbi.nlm.nih.gov/36094425
Autor:
Lev I. Levitsky, Ksenia G. Kuznetsova, Anna A. Kliuchnikova, Irina Y. Ilina, Anton O. Goncharov, Anna A. Lobas, Mark V. Ivanov, Vassili N. Lazarev, Rustam H. Ziganshin, Mikhail V. Gorshkov, Sergei A. Moshkovskii
Publikováno v:
Journal of proteome research. 21(6)
Mass spectrometry-based proteome analysis implies matching the mass spectra of proteolytic peptides to amino acid sequences predicted from genomic sequences. Reliability of peptide variant identification in proteogenomic studies is often lacking. We
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d2654a768d0b048bb3974c7cc6b6be82
https://pubmed.ncbi.nlm.nih.gov/35536917
https://pubmed.ncbi.nlm.nih.gov/35536917
Autor:
T E Farafonova, Irina Y. Ilina, Anton O. Goncharov, Svetlana E. Novikova, Victor G. Zgoda, Mikhail V. Gorshkov, Anna A. Kliuchnikova, Sergei A. Moshkovskii, Mikhail A. Pyatnitskiy, Lev I. Levitsky, Ksenia G. Kuznetsova, Mark V. Ivanov
Publikováno v:
Journal of Proteome Research. 19:4046-4060
Adenosine-to-inosine RNA editing is an enzymatic post-transcriptional modification which modulates immunity and neural transmission in multicellular organisms. In particular, it involves editing of mRNA codons with the resulting amino acid substituti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cec236124de887710b5a9f25024391bc
https://doi.org/10.1021/acs.jproteome.0c00347
https://doi.org/10.1021/acs.jproteome.0c00347
Autor:
Xiyang Luo, Wout Bittremieux, Johannes Griss, Eric W Deutsch, Timo Sachsenberg, Lev I. Levitsky, Mark V. Ivanov, Julia A. Bubis, Ralf Gabriels, Henry Webel, Aniel Sanchez, Mingze Bai, Lukas Kall, Yasset Perez-Riverol
Publikováno v:
Luo, X, Bittremieux, W, Griss, J, Deutsch, E W, Sachsenberg, T, Levitsky, L I, Ivanov, M V, Bubis, J A, Gabriels, R, Webel, H, Sanchez, A, Bai, M, Käll, L & Perez-Riverol, Y 2022, ' A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics ', Journal of Proteome Research, vol. 21, no. 6, pp. 1566-1574 . https://doi.org/10.1021/acs.jproteome.2c00069
Spectrum clustering is a powerful strategy to minimize redundant mass spectral data by grouping highly similar mass spectra corresponding to repeatedly measured analytes. Based on spectrum similarity, near-identical spectra are grouped in clusters, a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1cfeec950c47b1fe9f7746cb9c9940ae
https://doi.org/10.1101/2022.01.25.477699
https://doi.org/10.1101/2022.01.25.477699
Autor:
Kseniya A. Yurku, Victoria A. Zaborova, Mark V. Ivanov, Sergey I. Dzhadayev, Svetlana A. Tkachenko, Shafaei Hassan, Evgenii A. Babydov, Dmitry Yu. Shestakov
Publikováno v:
Pakistan Journal of Medical and Health Sciences. 16:729-730
Background and Objective: low back pain has a huge impact on the patient's quality of life and imposes an economic burden on healthcare systems. New possibilities for low back pain treatment have opened up with the implementation of shockwave therapy
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1497cb7a6e92b7cdc0d55a49fb7c6bbd
https://doi.org/10.53350/pjmhs22164729
https://doi.org/10.53350/pjmhs22164729
Publikováno v:
Journal of Proteome Research. 18:709-714
Many of the novel ideas that drive today's proteomic technologies are focused essentially on experimental or data-processing workflows. The latter are implemented and published in a number of ways, from custom scripts and programs, to projects built
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1ba1102a4c5a7228a87970485bd1d81
https://doi.org/10.1021/acs.jproteome.8b00717
https://doi.org/10.1021/acs.jproteome.8b00717