Deep clonal profiling of formalin fixed paraffin embedded clinical samples.

Autor: Tara Holley, Elizabeth Lenkiewicz, Lisa Evers, Waibhav Tembe, Christian Ruiz, Joel R Gsponer, Cyrill A Rentsch, Lukas Bubendorf, Mark Stapleton, Doug Amorese, Christophe Legendre, Heather E Cunliffe, Ann E McCullough, Barbara Pockaj, David Craig, John Carpten, Daniel Von Hoff, Christine Iacobuzio-Donahue, Michael T Barrett

Publikováno v: PLoS ONE, Vol 7, Iss 11, p e50586 (2012)

Formalin fixed paraffin embedded (FFPE) tissues are a vast resource of annotated clinical samples. As such, they represent highly desirable and informative materials for the application of high definition genomics for improved patient management and

Externí odkaz: https://doaj.org/article/e6f8453cf35a4d818e92b015e7df1c5b

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.

Autor: Xiao-yong Li, Stewart MacArthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Luengo Hendriks, Hou Cheng Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin

Publikováno v: PLoS Biology, Vol 6, Iss 2, p e27 (2008)

Identifying the genomic regions bound by sequence-specific regulatory factors is central both to deciphering the complex DNA cis-regulatory code that controls transcription in metazoans and to determining the range of genes that shape animal morphoge

Externí odkaz: https://doaj.org/article/1c0cb54e3f884aad8d2824668852d428

RNA editing in Drosophila melanogaster: New targets and functional consequences

Autor: Susan E. Celniker, Joseph W. Carlson, Mark Stapleton

Publikováno v: Stapleton, Mark; Carlson, Joseph W.; & Celniker, Susan E.(2006). RNA editing in Drosophila melanogaster: new targets and functional consequences. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/6x15q2gh

Adenosine deaminases that act on RNA [adenosine deaminase, RNA specific (ADAR)] catalyze the site-specific conversion of adenosine to inosine in primary mRNA transcripts. These re-coding events affect coding potential, splice sites, and stability of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a8174ec041ad433774672d14c6967641
https://doi.org/10.1261/rna.254306

TAK1 Participates in c-Jun N-Terminal Kinase Signaling during Drosophila Development

Autor: Kunihiro Matsumoto, Hiroshi Shibuya, Mark Stapleton, Makoto Nakamura, Maria C. Danos, Naoto Ueno, Yoshihiro Takatsu, Michael B. O'Connor

Publikováno v: Molecular and Cellular Biology. 20:3015-3026

Transforming growth factor beta (TGF-beta)-activated kinase 1 (TAK1) is a member of the MAPKKK superfamily and has been characterized as a component of the TGF-beta/bone morphogenetic protein signaling pathway. TAK1 function has been extensively stud

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad331bc533ec84935199c859a4862522
https://doi.org/10.1128/mcb.20.9.3015-3026.2000

Deep Clonal Profiling of Formalin Fixed Paraffin Embedded Clinical Samples

Autor: Lukas Bubendorf, Barbara A. Pockaj, John D. Carpten, Christian Ruiz, Christine A. Iacobuzio-Donahue, Ann E. McCullough, Doug Amorese, Heather E. Cunliffe, Elizabeth Lenkiewicz, Christophe Legendre, Daniel D. Von Hoff, Michael T. Barrett, David Craig, Waibhav Tembe, Joel R. Gsponer, Cyrill A. Rentsch, Mark Stapleton, Lisa Evers, Tara Holley

Publikováno v: PLoS ONE
PLoS ONE, Vol 7, Iss 11, p e50586 (2012)

Formalin fixed paraffin embedded (FFPE) tissues are a vast resource of annotated clinical samples. As such, they represent highly desirable and informative materials for the application of high definition genomics for improved patient management and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b4d75dd5c33755cd40bf3a9a338aa542
http://europepmc.org/articles/PMC3511535