Zobrazeno 1 - 10
of 30
pro vyhledávání: '"Mark Pieterse"'
Autor:
Michael Martin, Regina Heidenreich, Wigard Kloosterman, Hugo Olsman, Katka Franke, Ronja Isabelle Mülfarth, Salvador Aguilar-Rosas, Mark Pieterse, Jamie Langelaar, Wim van Esch, Renee van Schreurs, Lisa van der Made, Bob Löwenberg, Ronald Plasterk, Janna Krüger
Publikováno v:
Journal for ImmunoTherapy of Cancer, Vol 11, Iss Suppl 1 (2023)
Externí odkaz:
https://doaj.org/article/d956964ab9f14e9a9977d1c8af38a289
Autor:
Amin Allahyar, Mark Pieterse, Joost Swennenhuis, G. Tjitske Los-de Vries, Mehmet Yilmaz, Roos Leguit, Ruud W. J. Meijers, Robert van der Geize, Joost Vermaat, Arjen Cleven, Tom van Wezel, Arjan Diepstra, Léon C. van Kempen, Nathalie J. Hijmering, Phylicia Stathi, Milan Sharma, Adrien S. J. Melquiond, Paula J. P. de Vree, Marjon J. A. M. Verstegen, Peter H. L. Krijger, Karima Hajo, Marieke Simonis, Agata Rakszewska, Max van Min, Daphne de Jong, Bauke Ylstra, Harma Feitsma, Erik Splinter, Wouter de Laat
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Preservation of cancer biopsies by FFPE introduces DNA fragmentation, hindering analysis of rearrangements. Here the authors introduce FFPE Targeted Locus Capture for identification of translocations in preserved samples.
Externí odkaz:
https://doaj.org/article/15e52e7d12f34aa7b62f485085760e59
Autor:
Jos Jonkers, Frans B.L. Hogervorst, Jost Seibler, Ellen Wientjens, Mark Pieterse, Pramudita Prasetyanti, Christiaan N. Klijn, Rinske Drost, Ingrid van der Heijden, Hanneke van der Gulden, Peter Bouwman
Supplementary Methods - PDF 55K, A detailed protocol for the classification of BRCA1 sequence variants using R26CreERT2/RMCE;Brca1SCo/{delta} ES cells
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::068d5af15587535ab78cd5d5eaacd641
https://doi.org/10.1158/2159-8290.22528938
https://doi.org/10.1158/2159-8290.22528938
Autor:
Jos Jonkers, Frans B.L. Hogervorst, Jost Seibler, Ellen Wientjens, Mark Pieterse, Pramudita Prasetyanti, Christiaan N. Klijn, Rinske Drost, Ingrid van der Heijden, Hanneke van der Gulden, Peter Bouwman
Supplementary Tables 1-4 - PDF 99K, Information on BRCA1 mutants used to validate the functional complementation assays (Table S1), BRCA1 VUS showing low protein levels (Table S2), the results of all proliferation and cisplatin sensitivity assays (Ta
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e662a2da6366b4ce4366ef39ae5213c2
https://doi.org/10.1158/2159-8290.22528935.v1
https://doi.org/10.1158/2159-8290.22528935.v1
Autor:
Jos Jonkers, Frans B.L. Hogervorst, Jost Seibler, Ellen Wientjens, Mark Pieterse, Pramudita Prasetyanti, Christiaan N. Klijn, Rinske Drost, Ingrid van der Heijden, Hanneke van der Gulden, Peter Bouwman
Supplementary Figures 1-4 - PDF 213K, This file contains additional data on the generation of R26CreERT2/RMCE;Brca1SCo/{delta} ES cells and analysis of Rosa26 targeted human BRCA1 cDNA expression (Fig. S1), analysis of BRCA1 VUS protein and mRNA expr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::14fd47eaa865c087f9c6b724991ad2ab
https://doi.org/10.1158/2159-8290.22528941.v1
https://doi.org/10.1158/2159-8290.22528941.v1
Autor:
Emile E. Voest, Jan N.M. Ijzermans, Marco J. Koudijs, Katharina Biermann, John A. Foekens, John W.M. Martens, Fried Zwartkruis, Armel Lefebvre, Marcel Smid, Anne van Galen, Salo Ooft, Zarina S. Lalmahomed, Ronne Brunekreef, Christina Stangl, Anieta M. Sieuwerts, Markus J. van Roosmalen, Mark Pieterse, Robert R.J. Coebergh van den Braak, Wigard P. Kloosterman
Colon tumor sample overview, clinical characteristics, fusion genes and KRAS, NRAS, BRAF mutation status and sequencing statistics.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f2a256c59c51f564473fc640548b156
https://doi.org/10.1158/0008-5472.22415336.v1
https://doi.org/10.1158/0008-5472.22415336.v1
Autor:
Emile E. Voest, Jan N.M. Ijzermans, Marco J. Koudijs, Katharina Biermann, John A. Foekens, John W.M. Martens, Fried Zwartkruis, Armel Lefebvre, Marcel Smid, Anne van Galen, Salo Ooft, Zarina S. Lalmahomed, Ronne Brunekreef, Christina Stangl, Anieta M. Sieuwerts, Markus J. van Roosmalen, Mark Pieterse, Robert R.J. Coebergh van den Braak, Wigard P. Kloosterman
Genomic rearrangements that give rise to oncogenic gene fusions can offer actionable targets for cancer therapy. Here we present a systematic analysis of oncogenic gene fusions among a clinically well-characterized, prospectively collected set of 278
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::58a923860b81916ef0f93edf4d22c1c9
https://doi.org/10.1158/0008-5472.c.6509240.v1
https://doi.org/10.1158/0008-5472.c.6509240.v1
Supplementary Data file from A Systematic Analysis of Oncogenic Gene Fusions in Primary Colon Cancer
Autor:
Emile E. Voest, Jan N.M. Ijzermans, Marco J. Koudijs, Katharina Biermann, John A. Foekens, John W.M. Martens, Fried Zwartkruis, Armel Lefebvre, Marcel Smid, Anne van Galen, Salo Ooft, Zarina S. Lalmahomed, Ronne Brunekreef, Christina Stangl, Anieta M. Sieuwerts, Markus J. van Roosmalen, Mark Pieterse, Robert R.J. Coebergh van den Braak, Wigard P. Kloosterman
Combined supplementary data file containing: -extended materials and methods, describing details of sample collection and isolation, sequencing data generation, cell culturing and protein analysis. -Supplementary Figure S1 showing patient inclusion i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e167d5f6d01e19f2822c7d205357c4d
https://doi.org/10.1158/0008-5472.22415339.v1
https://doi.org/10.1158/0008-5472.22415339.v1
Autor:
Joost Vermaat, Tom van Wezel, Paula J P de Vree, Wouter de Laat, Bauke Ylstra, Amin Allahyar, Marieke Simonis, Harma Feitsma, Adrien S. J. Melquiond, Max van Min, Agata Rakszewska, Erik Splinter, Daphne de Jong, Joost Swennenhuis, Milan Sharma, Mehmet Yilmaz, Arjan Diepstra, Roos J Leguit, Robert van der Geize, Phylicia Stathi, Karima Hajo, Nathalie J. Hijmering, Mark Pieterse, Marjon J.A.M. Verstegen, Peter H.L. Krijger, Ruud W J Meijers, G Tjitske Los-de Vries, Léon C van Kempen, Arjen H.G. Cleven
Publikováno v:
Nature Communications, 12(1):3361. Nature Publishing Group
Nature Communications
Nature Communications, 12(1). Nature Publishing Group
Nature Communications, 12(1). NATURE PORTFOLIO
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Allahyar, A, Pieterse, M, Swennenhuis, J, Los-de Vries, G T, Yilmaz, M, Leguit, R, Meijers, R W J, van der Geize, R, Vermaat, J, Cleven, A, van Wezel, T, Diepstra, A, van Kempen, L O C, Hijmering, N J, Stathi, P, Sharma, M, Melquiond, A S J, de Vree, P J P, Verstegen, M J A M, Krijger, P H L, Hajo, K, Simonis, M, Rakszewska, A, van Min, M, de Jong, D, Ylstra, B, Feitsma, H, Splinter, E & de Laat, W 2021, ' Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing ', Nature Communications, vol. 12, no. 1, 3361 . https://doi.org/10.1038/s41467-021-23695-8
Nature Communications
Nature Communications, 12(1). Nature Publishing Group
Nature Communications, 12(1). NATURE PORTFOLIO
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Allahyar, A, Pieterse, M, Swennenhuis, J, Los-de Vries, G T, Yilmaz, M, Leguit, R, Meijers, R W J, van der Geize, R, Vermaat, J, Cleven, A, van Wezel, T, Diepstra, A, van Kempen, L O C, Hijmering, N J, Stathi, P, Sharma, M, Melquiond, A S J, de Vree, P J P, Verstegen, M J A M, Krijger, P H L, Hajo, K, Simonis, M, Rakszewska, A, van Min, M, de Jong, D, Ylstra, B, Feitsma, H, Splinter, E & de Laat, W 2021, ' Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing ', Nature Communications, vol. 12, no. 1, 3361 . https://doi.org/10.1038/s41467-021-23695-8
In routine diagnostic pathology, cancer biopsies are preserved by formalin-fixed, paraffin-embedding (FFPE) procedures for examination of (intra-) cellular morphology. Such procedures inadvertently induce DNA fragmentation, which compromises sequenci
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f015170cc76e934c99a06da52084f3ba
https://research.vumc.nl/en/publications/dbd7c41c-2950-4947-b268-32207673d8fd
https://research.vumc.nl/en/publications/dbd7c41c-2950-4947-b268-32207673d8fd
Autor:
Wouter de Laat, Anton van Weert, Sanne Boersma, Peter H.L. Krijger, Lieke I P M Donders, Jo Vandesompele, Rene J T M Roymans, Stefan Meijer, Francesca Mattiroli, Tim A. Hoek, Pim W. Toonen, Edwin Dekker, Monique Nijhuis, Thomas W van Ravesteyn, Ive Logister, Fred J Dom, Maaike Broeders, Mark Pieterse, Lieven B J van der Velden, Martijn Bosch, Bram M.P. Verhagen, Marvin E. Tanenbaum, Marjon J.A.M. Verstegen, Jeroen H.B. van de Bovenkamp, Rob Ruijtenbeek
Publikováno v:
Nature Biotechnology, 39(10), 1182-1184. Nature Publishing Group
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::abf13f7adf6a0ecc214d0a147ddeb3bf
https://pure.knaw.nl/portal/en/publications/4f9be3a2-c913-455b-aeeb-b0f8bf0d8146
https://pure.knaw.nl/portal/en/publications/4f9be3a2-c913-455b-aeeb-b0f8bf0d8146