Zobrazeno 1 - 10
of 119
pro vyhledávání: '"Mark P Simmons"'
Publikováno v:
PLoS ONE, Vol 11, Iss 3, p e0150752 (2016)
Lagerstroemia (crape myrtle) is an important plant genus used in ornamental horticulture in temperate regions worldwide. As such, numerous hybrids have been developed. However, DNA sequence resources and genome information for Lagerstroemia are limit
Externí odkaz:
https://doaj.org/article/5b82229e625d4ae9b9dbe987dff3d01e
Autor:
Mark P Simmons
Publikováno v:
PLoS Computational Biology, Vol 11, Iss 10, p e1004536 (2015)
Externí odkaz:
https://doaj.org/article/c9a554dccf434b33801f7e6633a8fbc2
Autor:
Scott A Bernhardt, Mark P Simmons, Ken E Olson, Barry J Beaty, Carol D Blair, William C Black
Publikováno v:
PLoS ONE, Vol 7, Iss 9, p e44198 (2012)
RNA silencing, or RNA interference (RNAi) in metazoans mediates development, reduces viral infection and limits transposon mobility. RNA silencing involves 21-30 nucleotide RNAs classified into microRNA (miRNA), exogenous and endogenous small interfe
Externí odkaz:
https://doaj.org/article/8659ddf07e6f41829ae0c7e5b84046fb
Publikováno v:
Cladistics.
Autor:
Mark P. Simmons, Olivier Maurin, Paul Bailey, Grace E. Brewer, Shyamali Roy, Julio A. Lombardi, Félix Forest, William J. Baker
Publikováno v:
Cladistics : the international journal of the Willi Hennig SocietyReferences. 38(5)
We examined the impact of successive alignment quality-control steps on downstream phylogenomic analyses. We applied a recently published phylogenomics pipeline that was developed for the Angiosperms353 target-sequence-capture probe set to the flower
Autor:
David J. Keil, Mark P. Simmons, Vicki A. Funk, Shannon D. Fehlberg, Wendy C. Hodgson, Jennifer Ackerfield
Publikováno v:
Journal of Systematics and Evolution. 58:881-912
Summary coalescent methods offer an alternative to the concatenation (supermatrix) approach for inferring phylogenetic relationships from genome-scale datasets. Given huge datasets, broad congruence between contrasting phylogenomic paradigms is often
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ef703c410060bfcde82631d7f7ce554f
https://doi.org/10.1101/2022.03.08.483551
https://doi.org/10.1101/2022.03.08.483551
Publikováno v:
RNA
Compensatory mutations are crucial for functional RNA because they maintain RNA configuration and thus function. Compensatory mutation has traditionally been considered to be a two-step substitution through the GU-base-pair intermediate. We tested fo
Autor:
Mark P. Simmons, John M. Kessenich
Publikováno v:
Cladistics. 36:322-340
Contemporary phylogenomic studies frequently incorporate two-step coalescent analyses wherein the first step is to infer individual-gene trees, generally using maximum-likelihood implemented in the popular programs PhyML or RAxML. Four concerns with
Publikováno v:
Cladistics : the international journal of the Willi Hennig SocietyReferences. 22(2)
We tested whether it is beneficial for the accuracy of phylogenetic inference to sample characters that are evolving under different sets of parameters, using both Bayesian MCMC (Markov chain Monte Carlo) and parsimony approaches. We examined differe