Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Mark A. Shifman"'
Autor:
Kei-Hoi Cheung, Erol E. Gulcicek, Perry L. Miller, Jesse Rinehart, Terence Wu, Kenneth R. Williams, TuKiet T. Lam, Mark A. Shifman, Kathryn L. Stone, Angus C. Nairn, Can Bruce, Robert D. Bjornson, Christopher M. Colangelo, Nicholas Carriero
Publikováno v:
Genomics, Proteomics & Bioinformatics, Vol 13, Iss 1, Pp 25-35 (2015)
Genomics, Proteomics & Bioinformatics
Genomics, Proteomics & Bioinformatics
We report a significantly-enhanced bioinformatics suite and database for proteomics research called Yale Protein Expression Database (YPED) that is used by investigators at more than 300 institutions worldwide. YPED meets the data management, archiva
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c866b04e97b94e9aaf356731bab9dc29
http://www.sciencedirect.com/science/article/pii/S1672022915000091
http://www.sciencedirect.com/science/article/pii/S1672022915000091
X!!Tandem, an Improved Method for Running X!Tandem in Parallel on Collections of Commodity Computers
Autor:
Christopher M. Colangelo, Robert D. Bjornson, Perry L. Miller, Kenneth R. Williams, Mark A. Shifman, Nicholas Carriero, Kei-Hoi Cheung
Publikováno v:
Journal of Proteome Research. 7:293-299
The widespread use of mass spectrometry for protein identification has created a demand for computationally efficient methods of matching mass spectrometry data to protein databases. A search using X!Tandem, a popular and representative program, can
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9338d693a98c6a47e34a18c083b07a21
https://doi.org/10.1021/pr0701198
https://doi.org/10.1021/pr0701198
Autor:
Yuli Li, Perry L. Miller, Mark A. Shifman, Kei-Hoi Cheung, Christopher M. Colangelo, Kathryn L. Stone, Kenneth R. Williams, Terence Wu
Publikováno v:
Journal of Proteome Research. 6:4019-4024
We have developed an integrated web-accessible software system called the Yale Protein Expression Database (YPED) to address the need for storage, retrieval, and integrated analysis of large amounts of data from high throughput proteomic technologies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa28623187c812b0bb6eb41498932cf2
https://doi.org/10.1021/pr070325f
https://doi.org/10.1021/pr070325f
Autor:
Perry L. Miller, Ranjana Srivastava, Tong-Ruei Li, Cynthia Brandt, Kevin P. White, Mark A. Shifman
Publikováno v:
Journal of the American Medical Informatics Association. 11:294-299
This report describes XDesc (eXperiment Description), a pilot project that serves as a case study exploring the degree to which an informatics capability developed in a clinical application can be ported for use in the biosciences. In particular, XDe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff285828631c2c0366601ef1570de9ea
https://doi.org/10.1197/jamia.m1458
https://doi.org/10.1197/jamia.m1458
Autor:
Mark A. Shifman
Publikováno v:
Bioinformatics. 9:511-515
Pulse field gel electrophoresis mapping is an important technique for characterizing large segments of DNA and constructing long-range restriction maps. We have developed a tool, PFGE MAPPER, to aid in the construction of pulse field electrophoresis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0aa2d9cce12c54b62c2703021f4d97c6
https://doi.org/10.1093/bioinformatics/9.5.511
https://doi.org/10.1093/bioinformatics/9.5.511
Publikováno v:
The International Journal of Supercomputing Applications. 6:147-163
This article describes research in progress at the Yale University School of Medicine on the use of parallel computation in medicine and biology. We have experi mented with the parallelization of programs from sev eral different biomedical fields, us
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e79c3499a618603b48dd7ce4cda2c0fa
https://doi.org/10.1177/109434209200600203
https://doi.org/10.1177/109434209200600203
Autor:
Mark A. Shifman
Publikováno v:
Laboratory Medicine. 22:639-643
A rule-based expert system called FABHELP has been developed that applies the recently proposed French-American-British (FAB) criteria for diagnosing acute myeloid leukemia and myelodysplastic syndromes. The program diagnoses Ml-M7 and myelodysplasti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::14e46cdc5a679e205cefb7b7d7c8af88
https://doi.org/10.1093/labmed/22.9.639
https://doi.org/10.1093/labmed/22.9.639
Publikováno v:
AMIA ... Annual Symposium proceedings. AMIA Symposium.
We devised an algorithm for integrating similar clinical research data collection instruments to create a common measurement instrument. We tested this algorithm using questions from several similar surveys. We encountered differing levels of granula
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::ea769c673abb93d507ed094a97925b32
https://pubmed.ncbi.nlm.nih.gov/14728322
https://pubmed.ncbi.nlm.nih.gov/14728322
Autor:
T.G. Mattson, Mark A. Shifman
Publikováno v:
Proceedings Scalable High Performance Computing Conference SHPCC-92..
Presents a sampling of work applying parallel computation to computational chemistry using the Linda machine-independent parallel programming language. The authors focus on two projects in particular. The first project parallelized the well-known dis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8b05aeb570de34f29098b57659313a7d
https://doi.org/10.1109/shpcc.1992.232640
https://doi.org/10.1109/shpcc.1992.232640
This case study describes a project that explores issues of quality of service (QoS) relevant to the next-generation Internet (NGI), using the PathMaster application in a testbed envi- ronment. PathMaster is a prototype computer system that analyzes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::544838f729c408ea4979f28283927d93
https://europepmc.org/articles/PMC346636/
https://europepmc.org/articles/PMC346636/
