Zobrazeno 1 - 10
of 48
pro vyhledávání: '"Mario Latendresse"'
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-8 (2019)
Abstract Background Microbiomes are complex aggregates of organisms, each of which has its own extensive metabolic network. A variety of metabolites are exchanged between the microbes. The challenge we address is understanding the overall metabolic c
Externí odkaz:
https://doaj.org/article/0abf236cb2894e519d232a4385b75158
Autor:
Mario Latendresse, Peter D. Karp
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-13 (2018)
Abstract Background Completion of genome-scale flux-balance models using computational reaction gap-filling is a widely used approach, but its accuracy is not well known. Results We report on computational experiments of reaction gap filling in which
Externí odkaz:
https://doaj.org/article/d2845e9c08624905b8ec604723f22ad6
Autor:
Peter D. Karp, Natalia Ivanova, Markus Krummenacker, Nikos Kyrpides, Mario Latendresse, Peter Midford, Wai Kit Ong, Suzanne Paley, Rekha Seshadri
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
Microbial genome web portals have a broad range of capabilities that address a number of information-finding and analysis needs for scientists. This article compares the capabilities of the major microbial genome web portals to aid researchers in det
Externí odkaz:
https://doaj.org/article/05469c10a9d847339ccda6bcbd8f961c
Autor:
Peter D. Karp, Richard Billington, Timothy A. Holland, Anamika Kothari, Markus Krummenacker, Daniel Weaver, Mario Latendresse, Suzanne Paley
Publikováno v:
Metabolites, Vol 5, Iss 2, Pp 291-310 (2015)
BioCyc.org is a genome and metabolic pathway web portal covering 5500 organisms, including Homo sapiens, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli. These organism-specific databases have undergone variable degrees of curatio
Externí odkaz:
https://doaj.org/article/3340b4185e814906840530c0f2cf843a
Publikováno v:
Metabolites, Vol 9, Iss 5, p 88 (2019)
Interpreting changes in metabolite abundance in response to experimental treatments or disease states remains a major challenge in metabolomics. Pathway Covering is a new algorithm that takes a list of metabolites (compounds) and determines a minimum
Externí odkaz:
https://doaj.org/article/b6909947531a4088a59e75f928131611
Autor:
Jeremiah P. Malerich, David Krieger, Peter D. Karp, Judy Szeto, Michael Deleo, Markus Krummenacker, David Stout, Sahana Mallya, Jason D. White, Vi-Anh Vu, Nathan Collins, Mario Latendresse, Yonael Gorfu, Peter B. Madrid, Kristina Rucker, Leslie A. Hokama, Jin-Ping Lim
Publikováno v:
Organic Process Research & Development. 24:2064-2077
Automated peptide and oligonucleotide synthesizers enabled a revolution in molecular biology and helped pave the way to modern synthetic biology. Similarly, fully automated synthetic chemistry coul...
Publikováno v:
Microbial Systems Biology ISBN: 9781071615843
The MetaFlux software supports creating, executing, and solving quantitative metabolic flux models using flux balance analysis (FBA). MetaFlux offers four modes of operation: (1) solving mode executes an FBA model for an individual organism or for an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::194286b973afeab1ee532c3d7c851f00
https://doi.org/10.1007/978-1-0716-1585-0_12
https://doi.org/10.1007/978-1-0716-1585-0_12
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2349
The MetaFlux software supports creating, executing, and solving quantitative metabolic flux models using flux balance analysis (FBA). MetaFlux offers four modes of operation: (1) solving mode executes an FBA model for an individual organism or for an
Autor:
Markus Krummenacker, Wai Kit Ong, Mario Latendresse, Peter D. Karp, Anamika Kothari, Pallavi Subhraveti, Carol A. Fulcher, Quang Ong, Peter E. Midford, Richard Billington, Ingrid M. Keseler, Ron Caspi, Suzanne M. Paley
Publikováno v:
Nucleic Acids Research
MetaCyc (https://MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains more than 2570 pathways derived from >54 000 publications, making it the largest curated collection of metabol
Autor:
Wai Kit Ong, Pallavi Subhraveti, Markus Krummenacker, Peter D. Karp, Suzanne M. Paley, Peter E. Midford, Quang Ong, Carol A. Fulcher, Ingrid M. Keseler, Mario Latendresse, Ron Caspi, Richard Billington, Anamika Kothari
Publikováno v:
Briefings in Bioinformatics. 20:1085-1093
BioCyc.org is a microbial genome Web portal that combines thousands of genomes with additional information inferred by computer programs, imported from other databases and curated from the biomedical literature by biologist curators. BioCyc also prov