Zobrazeno 1 - 10
of 90
pro vyhledávání: '"Mario, Stanke"'
Autor:
Tomáš Brůna, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Mario Stanke, Natalia Nenasheva, Matthis Ebel, Lars Gabriel, Katharina J. Hoff
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-21 (2023)
Abstract Background The Earth Biogenome Project has rapidly increased the number of available eukaryotic genomes, but most released genomes continue to lack annotation of protein-coding genes. In addition, no transcriptome data is available for some
Externí odkaz:
https://doaj.org/article/4a5e2b41d1084dbfb2a41260d9115b99
Autor:
Matthis Ebel, Martin Domin, Nicola Neumann, Carsten Oliver Schmidt, Martin Lotze, Mario Stanke
Publikováno v:
Neuroimage: Reports, Vol 3, Iss 3, Pp 100181- (2023)
Sex differences in the size of specific brain structures have been extensively studied, but careful and reproducible statistical hypothesis testing to identify them produced overall small effect sizes and differences in brains of males and females. O
Externí odkaz:
https://doaj.org/article/6dae452243b44f279b185cfcae400c15
Publikováno v:
BMC Bioinformatics, Vol 23, Iss 1, Pp 1-19 (2022)
Abstract Background An important initial phase of arguably most homology search and alignment methods such as required for genome alignments is seed finding. The seed finding step is crucial to curb the runtime as potential alignments are restricted
Externí odkaz:
https://doaj.org/article/e3f4fa25036d4183a3ef035842920e5f
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-12 (2021)
Abstract Background BRAKER is a suite of automatic pipelines, BRAKER1 and BRAKER2, for the accurate annotation of protein-coding genes in eukaryotic genomes. Each pipeline trains statistical models of protein-coding genes based on provided evidence a
Externí odkaz:
https://doaj.org/article/c79f7efdc41e45889aec4d525a2a106e
Autor:
Nicolae Herndon, Jennifer Shelton, Lizzy Gerischer, Panos Ioannidis, Maria Ninova, Jürgen Dönitz, Robert M. Waterhouse, Chun Liang, Carsten Damm, Janna Siemanowski, Peter Kitzmann, Julia Ulrich, Stefan Dippel, Georg Oberhofer, Yonggang Hu, Jonas Schwirz, Magdalena Schacht, Sabrina Lehmann, Alice Montino, Nico Posnien, Daniela Gurska, Thorsten Horn, Jan Seibert, Iris M. Vargas Jentzsch, Kristen A. Panfilio, Jianwei Li, Ernst A. Wimmer, Dominik Stappert, Siegfried Roth, Reinhard Schröder, Yoonseong Park, Michael Schoppmeier, Ho-Ryun Chung, Martin Klingler, Sebastian Kittelmann, Markus Friedrich, Rui Chen, Boran Altincicek, Andreas Vilcinskas, Evgeny Zdobnov, Sam Griffiths-Jones, Matthew Ronshaugen, Mario Stanke, Sue J. Brown, Gregor Bucher
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-13 (2020)
Abstract Background The red flour beetle Tribolium castaneum has emerged as an important model organism for the study of gene function in development and physiology, for ecological and evolutionary genomics, for pest control and a plethora of other t
Externí odkaz:
https://doaj.org/article/d7f08d6886f3424bbf7f5c6e2f6a7099
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-7 (2019)
Abstract Background Vast amounts of next generation sequencing RNA data has been deposited in archives, accompanying very diverse original studies. The data is readily available also for other purposes such as genome annotation or transcriptome assem
Externí odkaz:
https://doaj.org/article/929aaf35f81e4b6c9b50b9505e3eafa2
Autor:
Kristin Franke, Isabell Karl, Tonatiuh Pena Centeno, Barbara Feldmeyer, Christian Lassek, Vicencio Oostra, Katharina Riedel, Mario Stanke, Christopher W. Wheat, Klaus Fischer
Publikováno v:
BMC Evolutionary Biology, Vol 19, Iss 1, Pp 1-16 (2019)
Abstract Background Phenotypic plasticity is a pervasive property of all organisms and considered to be of key importance for dealing with environmental variation. Plastic responses to temperature, which is one of the most important ecological factor
Externí odkaz:
https://doaj.org/article/5b65721472534516b509a1367e3d5ef4
Autor:
Rebekka Harting, Alexandra Nagel, Kai Nesemann, Annalena M. Höfer, Emmanouil Bastakis, Harald Kusch, Claire E. Stanley, Martina Stöckli, Alexander Kaever, Katharina J. Hoff, Mario Stanke, Andrew J. deMello, Markus Künzler, Cara H. Haney, Susanna A. Braus-Stromeyer, Gerhard H. Braus
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Phytopathogenic Verticillia cause Verticillium wilt on numerous economically important crops. Plant infection begins at the roots, where the fungus is confronted with rhizosphere inhabiting bacteria. The effects of different fluorescent pseudomonads,
Externí odkaz:
https://doaj.org/article/773135209cf34d5f80ca62e9e9d48f3a
Autor:
Evelyn E. Schwager, Prashant P. Sharma, Thomas Clarke, Daniel J. Leite, Torsten Wierschin, Matthias Pechmann, Yasuko Akiyama-Oda, Lauren Esposito, Jesper Bechsgaard, Trine Bilde, Alexandra D. Buffry, Hsu Chao, Huyen Dinh, HarshaVardhan Doddapaneni, Shannon Dugan, Cornelius Eibner, Cassandra G. Extavour, Peter Funch, Jessica Garb, Luis B. Gonzalez, Vanessa L. Gonzalez, Sam Griffiths-Jones, Yi Han, Cheryl Hayashi, Maarten Hilbrant, Daniel S. T. Hughes, Ralf Janssen, Sandra L. Lee, Ignacio Maeso, Shwetha C. Murali, Donna M. Muzny, Rodrigo Nunes da Fonseca, Christian L. B. Paese, Jiaxin Qu, Matthew Ronshaugen, Christoph Schomburg, Anna Schönauer, Angelika Stollewerk, Montserrat Torres-Oliva, Natascha Turetzek, Bram Vanthournout, John H. Werren, Carsten Wolff, Kim C. Worley, Gregor Bucher, Richard A. Gibbs, Jonathan Coddington, Hiroki Oda, Mario Stanke, Nadia A. Ayoub, Nikola-Michael Prpic, Jean-François Flot, Nico Posnien, Stephen Richards, Alistair P. McGregor
Publikováno v:
BMC Biology, Vol 15, Iss 1, Pp 1-27 (2017)
Abstract Background The duplication of genes can occur through various mechanisms and is thought to make a major contribution to the evolutionary diversification of organisms. There is increasing evidence for a large-scale duplication of genes in som
Externí odkaz:
https://doaj.org/article/7f4bb216c9a44bfe9d385085f175f1b4
Autor:
Anne K. Schütz, Verena Schöler, E. Tobias Krause, Mareike Fischer, Thomas Müller, Conrad M. Freuling, Franz J. Conraths, Mario Stanke, Timo Homeier-Bachmann, Hartmut H. K. Lentz
Publikováno v:
Animals, Vol 11, Iss 6, p 1723 (2021)
Animal activity is an indicator for its welfare and manual observation is time and cost intensive. To this end, automatic detection and monitoring of live captive animals is of major importance for assessing animal activity, and, thereby, allowing fo
Externí odkaz:
https://doaj.org/article/d7629680f3ba4d71a60d20c8825eec7e