Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Marina V Omelchenko"'
Autor:
Sanjida H Rangwala, Dmitry V Rudnev, Victor V Ananiev, Dong-Ha Oh, Andrea Asztalos, Barrett Benica, Evgeny A Borodin, Nathan Bouk, Vladislav I Evgeniev, Vamsi K Kodali, Vadim Lotov, Eyal Mozes, Marina V Omelchenko, Sofya Savkina, Ekaterina Sukharnikov, Joël Virothaisakun, Terence D Murphy, Kim D Pruitt, Valerie A Schneider
Publikováno v:
PLoS Biology, Vol 22, Iss 5, p e3002405 (2024)
We report a new visualization tool for analysis of whole-genome assembly-assembly alignments, the Comparative Genome Viewer (CGV) (https://ncbi.nlm.nih.gov/genome/cgv/). CGV visualizes pairwise same-species and cross-species alignments provided by Na
Externí odkaz:
https://doaj.org/article/5f3ee861c1894e2e9be54c30e3c86d5c
Autor:
Kira S Makarova, Marina V Omelchenko, Elena K Gaidamakova, Vera Y Matrosova, Alexander Vasilenko, Min Zhai, Alla Lapidus, Alex Copeland, Edwin Kim, Miriam Land, Konstantinos Mavrommatis, Samuel Pitluck, Paul M Richardson, Chris Detter, Thomas Brettin, Elizabeth Saunders, Barry Lai, Bruce Ravel, Kenneth M Kemner, Yuri I Wolf, Alexander Sorokin, Anna V Gerasimova, Mikhail S Gelfand, James K Fredrickson, Eugene V Koonin, Michael J Daly
Publikováno v:
PLoS ONE, Vol 2, Iss 9, p e955 (2007)
Bacteria of the genus Deinococcus are extremely resistant to ionizing radiation (IR), ultraviolet light (UV) and desiccation. The mesophile Deinococcus radiodurans was the first member of this group whose genome was completely sequenced. Analysis of
Externí odkaz:
https://doaj.org/article/cbc6365edcef4606a06111ed397e38e7
Autor:
Fu-Ping Lu, Carol DeWeese-Scott, John B. Anderson, James S. Song, Christopher J. Lanczycki, Zhaoxi Ke, Farideh Chitsaz, John D. Jackson, Mikhail Mullokandov, Roxanne A. Yamashita, Aron Marchler-Bauer, Marina V. Omelchenko, Chanjuan Zheng, Naigong Zhang, Noreen R. Gonzales, Marc Gwadz, Cynthia L. Robertson, Stephen H. Bryant, Gabriele H. Marchler, Jessica H. Fong, David I. Hurwitz, Lewis Y. Geer, Narmada Thanki, Renata C. Geer, Dachuan Zhang, Myra K. Derbyshire, Shennan Lu
Publikováno v:
Nucleic Acids Research
NCBI's Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from these footprints. CDD includes manually curated domain models that make
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4f2c026177984fae9f84c055b453ce27
http://europepmc.org/articles/PMC3013737
http://europepmc.org/articles/PMC3013737
Autor:
Anders Bekkelund, Valerian V. Dolja, Vibeke Leihne, Eugene V. Koonin, Erwin van den Born, Pål Ø. Falnes, Marina V. Omelchenko
Publikováno v:
Nucleic Acids Research
Bacterial and mammalian AlkB proteins are iron(II)- and 2-oxoglutarate-dependent dioxygenases that reverse methylation damage, such as 1-methyladenine and 3-methylcytosine, in RNA and DNA. An AlkB-domain is encoded by the genome of numerous single-st
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ec5564732beb463087853b566e68c4e
https://doi.org/10.1093/nar/gkn519
https://doi.org/10.1093/nar/gkn519
Autor:
Marina V. Omelchenko, Anatolii M. Lysenko, Yulia Yu Berestovskaya, Svetlana N. Dedysh, G. A. Zavarzin, Lina V. Vasilyeva, Wolf-Rainer Abraham
Publikováno v:
International Journal of Systematic and Evolutionary Microbiology. 56:2083-2088
A Gram-negative, aerobic, heterotrophic, non-pigmented, dimorphic prosthecate bacterium was isolated from tundra wetland soil and designated strain Z-0023T. Cells of this strain had a dimorphic life cycle and developed a non-adhesive stalk at a site
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ec4ad096ac737d7f9687207b06cf06d4
https://doi.org/10.1099/ijs.0.64122-0
https://doi.org/10.1099/ijs.0.64122-0
Autor:
Marina V. Omelchenko, Xiaoyun Qiu, Jizhong Zhou, James M. Tiedje, George W. Sundin, Elena K. Gaidamakova, Michael J. Daly, Liyou Wu, Alexander Vasilenko
Publikováno v:
Journal of Bacteriology. 188:1199-1204
The ionizing radiation (IR) dose that yields 20% survival (D 20 ) of Shewanella oneidensis MR-1 is lower by factors of 20 and 200 than those for Escherichia coli and Deinococcus radiodurans , respectively. Transcriptome analysis was used to identify
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1332870ed727d16c2322ce474d6fcc4f
https://doi.org/10.1128/jb.188.3.1199-1204.2006
https://doi.org/10.1128/jb.188.3.1199-1204.2006
Autor:
Marina V. Omelchenko, Heather M. Kostandarithes, Elena K. Gaidamakova, Alexander Vasilenko, Amudhan Venkateswaran, Debabrota Ghosal, Min Zhai, James K. Fredrickson, Hassan Brim, Kira S. Makarova, Michael J. Daly, Lawrence P. Wackett, Vera Y. Matrosova
Publikováno v:
FEMS Microbiology Reviews. 29:361-375
We have recently shown that Deinococcus radiodurans and other radiation resistant bacteria accumulate exceptionally high intracellular manganese and low iron levels. In comparison, the dissimilatory metal-reducing bacterium Shewanella oneidensis accu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0e97dbfabe0c09597995fafa95421f21
https://doi.org/10.1016/j.femsre.2004.12.007
https://doi.org/10.1016/j.femsre.2004.12.007
Autor:
Debabrota Ghosal, Marina V. Omelchenko, Elena K. Gaidamakova, Vera Y. Matrosova, Alexander Vasilenko, Amudhan Venkateswaran, Min Zhai, Heather M. Kostandarithes, Hassan Brim, Kira S. Makarova, Lawrence P. Wackett, James K. Fredrickson, Michael J. Daly
Publikováno v:
FEMS Microbiology Reviews. 29:361-375
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::61a707dc1339eda0b344d741ea0f1c05
https://doi.org/10.1016/j.fmrre.2004.12.007
https://doi.org/10.1016/j.fmrre.2004.12.007
Autor:
Yuri I. Wolf, Eugene V. Koonin, Pavel S. Novichkov, Mikhail S. Gelfand, Marina V. Omelchenko, Andrei A. Mironov
Publikováno v:
Journal of Bacteriology. 186:6575-6585
We describe a simple theoretical framework for identifying orthologous sets of genes that deviate from a clock-like model of evolution. The approach used is based on comparing the evolutionary distances within a set of orthologs to a standard interge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::46c97a400db0ad5c5f3581d045d4c9df
https://doi.org/10.1128/jb.186.19.6575-6585.2004
https://doi.org/10.1128/jb.186.19.6575-6585.2004
Publikováno v:
Current Microbiology. 27:255-259
The first psychrophilic obligate methanotroph was isolated from the tundra soil in the Polar Ural. The organism has an optimal temperature range of 3.5°–10°C, but at 20°C the growth is minimal. The cells of the metanotroph are Gram-negative cocc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7bfa5a16e5444e18480acb8911db6187
https://doi.org/10.1007/bf01575988
https://doi.org/10.1007/bf01575988