Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Marieke Vromman"'
Publikováno v:
Frontiers in Bioinformatics, Vol 2 (2022)
Circular RNA (circRNA) is a class of endogenous non-coding RNA characterized by a back-splice junction (BSJ). In general, large-scale circRNA BSJ detection is performed based on RNA sequencing data, followed by the selection and validation of circRNA
Externí odkaz:
https://doaj.org/article/affa476aa90344ebb5569e9b6da29f05
Autor:
Annelien Morlion, Eva Hulstaert, Marieke Vromman, Jasper Anckaert, Celine Everaert, Jo Vandesompele, Pieter Mestdagh
Publikováno v:
Frontiers in Bioinformatics, Vol 2 (2022)
Distinguishing circular RNA reads from reads derived from the linear host transcript is a challenging task because of sequence overlap. We developed a computational approach, CiLiQuant, that determines the relative circular and linear abundance of tr
Externí odkaz:
https://doaj.org/article/35276272e3f646908fd1b3e4a0342fa3
Autor:
Marieke Vromman, Jasper Anckaert, Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu, Trees-Juen Chuang, Roozbeh Dehghannasiri, Christoph Dieterich, Xin Dong, Paul Flicek, Enrico Gaffo, Wanjun Gu, Chunjiang He, Steve Hoffmann, Osagie Izuogu, Michael S. Jackson, Tobias Jakobi, Eric C. Lai, Justine Nuytens, Julia Salzman, Mauro Santibanez-Koref, Peter Stadler, Olivier Thas, Eveline Vanden Eynde, Kimberly Verniers, Guoxia Wen, Jakub Westholm, Li Yang, Chu-Yu Ye, Nurten Yigit, Guo-Hua Yuan, Jinyang Zhang, Fangqing Zhao, Jo Vandesompele, Pieter-Jan Volders
The detection of circular RNA molecules (circRNAs) is typically based on short-read RNA sequencing data processed by computational detection tools. During the last decade, a plethora of such tools have been developed, but a systematic comparison with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::110a536623d837fc2b96c3617b91a7f2
https://hdl.handle.net/11577/3488201
https://hdl.handle.net/11577/3488201
Autor:
Eric James de Bony, Aidan P. Tay, Justine Nuytens, Steve Lefever, Tim De Meyer, Marieke Vromman, Pieter Mestdagh, Tine Goovaerts, Nandan P. Deshpande, Stephen M. Gross, Katleen De Preter, Lucia Lorenzi, Jo Vandesompele, Nele Nijs, Pieter-Jan Volders, Jørgen Kjems, Scott Kuersten, Pavel Sumazin, Francisco Avila Cobos, Wim Trypsteen, Jasper Anckaert, Katrien Vanderheyden, Govardhan Anande, Marc R. Wilkins, Ken R. Bracke, Ting-Wen Chen, Robrecht Cannoodt, Tom Taghon, Yvan Saeys, Thomas B. Hansen, Fien Gysens, Hua-Sheng Chiu, Jan Koster, Karim Vermaelen, Gary P. Schroth, Ashwin Unnikrishnan
Publikováno v:
Lorenzi, L, Chiu, H S, Avila Cobos, F, Gross, S, Volders, P J, Cannoodt, R, Nuytens, J, Vanderheyden, K, Anckaert, J, Lefever, S, Tay, A P, de Bony, E J, Trypsteen, W, Gysens, F, Vromman, M, Goovaerts, T, Hansen, T B, Kuersten, S, Nijs, N, Taghon, T, Vermaelen, K, Bracke, K R, Saeys, Y, De Meyer, T, Deshpande, N P, Anande, G, Chen, T W, Wilkins, M R, Unnikrishnan, A, De Preter, K, Kjems, J, Koster, J, Schroth, G P, Vandesompele, J, Sumazin, P & Mestdagh, P 2021, ' The RNA Atlas expands the catalog of human non-coding RNAs ', Nature Biotechnology, vol. 39, no. 11, pp. 1453-1465 . https://doi.org/10.1038/s41587-021-00936-1
Nature biotechnology, 39(11), 1453-1465. Nature Publishing Group
Nature biotechnology, 39(11), 1453-1465. Nature Publishing Group
Existing compendia of non-coding RNA (ncRNA) are incomplete, in part because they are derived almost exclusively from small and polyadenylated RNAs. Here we present a more comprehensive atlas of the human transcriptome, which includes small and polyA
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c28c0dc79d11cbb4d61d9ccee5d6f076
Autor:
Jan Koster, Tom Taghon, Yvan Saeys, Katleen De Preter, Pieter Mestdagh, Pieter-Jan Volders, Karim Vermaelen, Tim De Meyer, Stephen M. Gross, Marieke Vromman, Pavel Sumazin, Hua-Sheng Chiu, Ken R. Bracke, Steve Lefever, Thomas B. Hansen, Fien Gysens, Aidan P. Tay, Jasper Anckaert, Eric James de Bony, Ting-Wen Chen, Katrien Vanderheyden, Marc R. Wilkins, Jørgen Kjems, Tine Goovaerts, Francisco Avila Cobos, Wim Trypsteen, Robrecht Cannoodt, Scott Kuersten, Justine Nuytens, Nandan P. Deshpande, Jo Vandesompele, Nele Nijs, Govardhan Anande, Ashwin Unnikrishnan, Gary P. Schroth, Lucia Lorenzi
Publikováno v:
Nature Biotechnology. 39:1467-1467
Autor:
Vromman, Marieke1 (AUTHOR) marieke.vromman@ugent.be, Vandesompele, Jo2 (AUTHOR), Volders, Pieter-Jan3 (AUTHOR) marieke.vromman@ugent.be
Publikováno v:
Briefings in Bioinformatics. Jan2021, Vol. 22 Issue 1, p288-297. 10p.
Autor:
Lorenzi, Lucia, Chiu, Hua-Sheng, Avila Cobos, Francisco, Gross, Stephen, Volders, Pieter-Jan, Cannoodt, Robrecht, Nuytens, Justine, Vanderheyden, Katrien, Anckaert, Jasper, Lefever, Steve, Tay, Aidan P., de Bony, Eric J., Trypsteen, Wim, Gysens, Fien, Vromman, Marieke, Goovaerts, Tine, Hansen, Thomas Birkballe, Kuersten, Scott, Nijs, Nele, Taghon, Tom
Publikováno v:
Nature Biotechnology; Nov2021, Vol. 39 Issue 11, p1453-1465, 13p
Autor:
Vromman, Marieke, Yigit, Nurten, Verniers, Kimberly, Lefever, Steve, Vandesompele, Jo, Volders, Pieter-Jan
Publikováno v:
Current Protocols; Jul2021, Vol. 1 Issue 7, p1-16, 16p
Autor:
Lorenzi, Lucia, Chiu, Hua-Sheng, Avila Cobos, Francisco, Gross, Stephen, Volders, Pieter-Jan, Cannoodt, Robrecht, Nuytens, Justine, Vanderheyden, Katrien, Anckaert, Jasper, Lefever, Steve, Tay, Aidan P., de Bony, Eric J., Trypsteen, Wim, Gysens, Fien, Vromman, Marieke, Goovaerts, Tine, Hansen, Thomas Birkballe, Kuersten, Scott, Nijs, Nele, Taghon, Tom
Publikováno v:
Nature Biotechnology; Nov2021, Vol. 39 Issue 11, p1467-1467, 1p
Autor:
Sheridan, Cormac
Publikováno v:
Nature Biotechnology; Nov2021, Vol. 39 Issue 11, p1467-1467, 1p