Zobrazeno 1 - 10
of 37
pro vyhledávání: '"Maria Maddalena Sperotto"'
Autor:
Thomas Nordahl Petersen, Oksana Lukjancenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank Møller Aarestrup, Thomas Sicheritz-Pontén
Publikováno v:
PLoS ONE, Vol 12, Iss 6, p e0179778 (2017)
[This corrects the article DOI: 10.1371/journal.pone.0176469.].
Externí odkaz:
https://doaj.org/article/99ec1a4dbe3a42faa8ccdb08ac9f5451
Autor:
Thomas Nordahl Petersen, Oksana Lukjancenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank Møller Aarestrup, Thomas Sicheritz-Pontén
Publikováno v:
PLoS ONE, Vol 12, Iss 5, p e0176469 (2017)
An increasing amount of species and gene identification studies rely on the use of next generation sequence analysis of either single isolate or metagenomics samples. Several methods are available to perform taxonomic annotations and a previous metag
Externí odkaz:
https://doaj.org/article/529ab897323343e6b1948bac1701568a
ProRafts: A machine-learning predictor forraftophilicity, the protein affinity for biomembrane rafts
BackgroundProtein raftophilicity refers to the affinity of proteins for cell biomembrane lipid domains, called ‘rafts’. Rafts are fluctuating nanoscale platforms that are enriched in cholesterol and sphingolipids, and that are considered relevant
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4cf12eaacbee52b4247444de77bb0356
https://doi.org/10.1101/2023.03.20.533471
https://doi.org/10.1101/2023.03.20.533471
Publikováno v:
Biomembrane Simulations
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9614650f82129028849ebde17c25af75
https://doi.org/10.1201/9781351060318-2
https://doi.org/10.1201/9781351060318-2
Publikováno v:
International Journal of Advances in Engineering Sciences and Applied Mathematics. 8:134-146
Biomembranes, which are made of a lipid bilayer matrix where proteins are embedded or attached, constitute a physical barrier for cell and its internal organelles. With regard to the distribution of their molecular components, biomembranes are both l
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7db95cb1202d172ac87e34361be48e55
https://doi.org/10.1007/s12572-015-0155-9
https://doi.org/10.1007/s12572-015-0155-9
Spontaneous Lipid Flip-Flop in Membranes: A Still Unsettled Picture from Experiments and Simulations
Publikováno v:
Springer Series in Biophysics ISBN: 9789811062438
Biomembrane asymmetry, whose regulation is important for function, is maintained by the movement of lipids from one bilayer leaflet to the other (flip-flop). During the last decades a number of studies have been done to characterize this process, and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::025865c5221fa8196084a3b1fd470ae2
https://doi.org/10.1007/978-981-10-6244-5_2
https://doi.org/10.1007/978-981-10-6244-5_2
Publikováno v:
Poursoroush, A, Sperotto, M M & Laradji, M 2017, ' Phase behavior of supported lipid bilayers: A systematic study by coarse-grained molecular dynamics simulations ', Journal of Chemical Physics, vol. 146, no. 15, 154902 . https://doi.org/10.1063/1.4981008
Solid-supported lipid bilayers are utilized by experimental scientists as models for biological membranes because of their stability. However, compared to free standing bilayers, their close proximity to the substrate may affect their phase behavior.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7fececd215f7ea9db8154f9861d83dd6
https://orbit.dtu.dk/en/publications/35b95317-5a0a-4aef-a4db-6b80ad6b5e57
https://orbit.dtu.dk/en/publications/35b95317-5a0a-4aef-a4db-6b80ad6b5e57
Autor:
Martin Christen Frølund Thomsen, Frank Møller Aarestrup, Oksana Lukjancenko, Maria Maddalena Sperotto, Thomas Nordahl Petersen, Thomas Sicheritz-Pontén, Ole Lund
Publikováno v:
PLoS ONE
PLoS ONE, Vol 12, Iss 5, p e0176469 (2017)
Petersen, T N, Lukjancenko, O, Thomsen, M C F, Sperotto, M M, Lund, O, Aarestrup, F M & Sicheritz-Pontén, T 2017, ' MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads ', P L o S One, vol. 12, no. 5, e0176469 . https://doi.org/10.1371/journal.pone.0176469
PLoS ONE, Vol 12, Iss 5, p e0176469 (2017)
Petersen, T N, Lukjancenko, O, Thomsen, M C F, Sperotto, M M, Lund, O, Aarestrup, F M & Sicheritz-Pontén, T 2017, ' MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads ', P L o S One, vol. 12, no. 5, e0176469 . https://doi.org/10.1371/journal.pone.0176469
An increasing amount of species and gene identification studies rely on the use of next generation sequence analysis of either single isolate or metagenomics samples. Several methods are available to perform taxonomic annotations and a previous metag
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::da90a1f9ada28063817c7f334b4c8c59
https://pubmed.ncbi.nlm.nih.gov/28604817
https://pubmed.ncbi.nlm.nih.gov/28604817
Autor:
Frank Møller Aarestrup, Nizar Haddad, Ole Lund, Dhany Saputra, Thomas Sicheritz-Pontén, Maria Maddalena Sperotto, Simon Rasmussen, Mette Voldby Larsen
Publikováno v:
BMC Bioinformatics
Saputra, D, Rasmussen, S, Larsen, M V, Haddad, N, Sperotto, M M, Aarestrup, F M, Lund, O & Sicheritz-Pontén, T 2015, ' Reads2Type: a web application for rapid microbial taxonomy identification ', B M C Bioinformatics, vol. 16, no. 1, 398 . https://doi.org/10.1186/s12859-015-0829-0
Saputra, D, Rasmussen, S, Larsen, M V, Haddad, N, Sperotto, M M, Aarestrup, F M, Lund, O & Sicheritz-Pontén, T 2015, ' Reads2Type: a web application for rapid microbial taxonomy identification ', B M C Bioinformatics, vol. 16, no. 1, 398 . https://doi.org/10.1186/s12859-015-0829-0
Identification of bacteria may be based on sequencing and molecular analysis of a specific locus such as 16S rRNA, or a set of loci such as in multilocus sequence typing. In the near future, healthcare institutions and routine diagnostic microbiology
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1267df6fcd3224158bd47d29b95e016a
https://doi.org/10.1186/s12859-015-0829-0
https://doi.org/10.1186/s12859-015-0829-0
Publikováno v:
Physics Reports, 437(1-2), 1-54. Elsevier
Phospholipids are the main components of biological membranes and dissolved in water these molecules self-assemble into closed structures, of which bilayers are the most relevant from a biological point of view. Lipid bilayers are often used, both in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c5534967d13fdf33550a2af0bcdcd059
https://doi.org/10.1016/j.physrep.2006.07.006
https://doi.org/10.1016/j.physrep.2006.07.006