Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Maria Izabel A Cavassim"'
Autor:
M Elise Lauterbur, Maria Izabel A Cavassim, Ariella L Gladstein, Graham Gower, Nathaniel S Pope, Georgia Tsambos, Jeffrey Adrion, Saurabh Belsare, Arjun Biddanda, Victoria Caudill, Jean Cury, Ignacio Echevarria, Benjamin C Haller, Ahmed R Hasan, Xin Huang, Leonardo Nicola Martin Iasi, Ekaterina Noskova, Jana Obsteter, Vitor Antonio Correa Pavinato, Alice Pearson, David Peede, Manolo F Perez, Murillo F Rodrigues, Chris CR Smith, Jeffrey P Spence, Anastasia Teterina, Silas Tittes, Per Unneberg, Juan Manuel Vazquez, Ryan K Waples, Anthony Wilder Wohns, Yan Wong, Franz Baumdicker, Reed A Cartwright, Gregor Gorjanc, Ryan N Gutenkunst, Jerome Kelleher, Andrew D Kern, Aaron P Ragsdale, Peter L Ralph, Daniel R Schrider, Ilan Gronau
Publikováno v:
eLife, Vol 12 (2023)
Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic datasets remains a major obstacle. Today, more realistic simulations are pos
Externí odkaz:
https://doaj.org/article/ed75e3569fbf474782ef3b9546fe2394
Autor:
M. Elise Lauterbur, Maria Izabel A. Cavassim, Ariella L. Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos, Jeff Adrion, Saurabh Belsare, Arjun Biddanda, Victoria Caudill, Jean Cury, Ignacio Echevarria, Benjamin C. Haller, Ahmed R. Hasan, Xin Huang, Leonardo Nicola Martin Iasi, Ekaterina Noskova, Jana Obšteter, Vitor Antonio Corrêa Pavinato, Alice Pearson, David Peede, Manolo F. Perez, Murillo F. Rodrigues, Chris C. R. Smith, Jeffrey P. Spence, Anastasia Teterina, Silas Tittes, Per Unneberg, Juan Manuel Vazquez, Ryan K. Waples, Anthony Wilder Wohns, Yan Wong, Franz Baumdicker, Reed A. Cartwright, Gregor Gorjanc, Ryan N. Gutenkunst, Jerome Kelleher, Andrew D. Kern, Aaron P. Ragsdale, Peter L. Ralph, Daniel R. Schrider, Ilan Gronau
Publikováno v:
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLIFE, vol. 12, no. RP84874, pp. 1-20 . https://doi.org/10.7554/eLife.84874
eLife
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLife, vol. 12, RP84874 . https://doi.org/10.7554/eLife.84874
eLife
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLife, vol. 12, RP84874 . https://doi.org/10.7554/eLife.84874
Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic data sets remains a major obstacle. Today, more realistic simulations are po
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8243d8d49970ab6eb1bb1ba7366c0d8f
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-508060
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-508060
Autor:
J. Peter W. Young, Sara Moeskjær, Alexey Afonin, Praveen Rahi, Marta Maluk, Euan K. James, Maria Izabel A. Cavassim, M. Harun-or Rashid, Aregu Amsalu Aserse, Benjamin J. Perry, En Tao Wang, Encarna Velázquez, Evgeny E. Andronov, Anastasia Tampakaki, José David Flores Félix, Raúl Rivas González, Sameh H. Youseif, Marc Lepetit, Stéphane Boivin, Beatriz Jorrin, Gregory J. Kenicer, Álvaro Peix, Michael F. Hynes, Martha Helena Ramírez-Bahena, Arvind Gulati, Chang-Fu Tian
Publikováno v:
Genes, Vol 12, Iss 1, p 111 (2021)
Bacteria currently included in Rhizobium leguminosarum are too diverse to be considered a single species, so we can refer to this as a species complex (the Rlc). We have found 429 publicly available genome sequences that fall within the Rlc and these
Externí odkaz:
https://doaj.org/article/da942dadc3e04d80afc37120714afa6f
The presence and impact of recessive lethal mutations has been widely documented in diploid outcrossing species. However, precise estimates in different species of the proportion of mutations that are recessive lethal remain limited. Here, we attempt
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::75469e64dc6dbf18b121e48fcf9b27ca
https://doi.org/10.1101/2022.04.22.489225
https://doi.org/10.1101/2022.04.22.489225
Autor:
Maria Izabel A. Cavassim, Zachary Baker, Carla Hoge, Mikkel H. Schierup, Molly Schumer, Molly Przeworski
Publikováno v:
Cavassim, M I A, Baker, Z, Hoge, C, Schierup, M H, Schumer, M & Przeworski, M 2022, ' PRDM9 losses in vertebrates are coupled to those of paralogs ZCWPW1 and ZCWPW2 ', PNAS (Proceedings of the National Academy of Sciences of the United States of America), vol. 119, no. 9, e2114401119 . https://doi.org/10.1073/pnas.2114401119
In most mammals and likely throughout vertebrates, the gene PRDM9 specifies the locations of meiotic double strand breaks; in mice and humans at least, it also aids in their repair. For both roles, many of the molecular partners remain unknown. Here,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::39ba35c743e2f4bdbdfbd3fc6c607c92
https://www.repository.cam.ac.uk/handle/1810/335499
https://www.repository.cam.ac.uk/handle/1810/335499
Autor:
Molly Przeworski, Molly Schumer, Maria Izabel A. Cavassim, Zachary Baker, Mikkel H. Schierup, Hoge C
In most mammals and likely throughout vertebrates, the gene PRDM9 specifies the locations of meiotic double strand breaks; in mice and humans at least, it also aids in their repair. For both roles, many of the molecular partners remain unknown. Here,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bcf79264b4be1cb5fcbacfa378eb16c6
https://doi.org/10.1101/2021.06.08.447603
https://doi.org/10.1101/2021.06.08.447603
Publikováno v:
Molecular Biology and Evolution
Cavassim, M I A, Andersen, S U, Bataillon, T & Schierup, M H 2021, ' Recombination facilitates adaptive evolution in rhizobial soil bacteria ', Molecular Biology and Evolution, vol. 38, no. 12 . https://doi.org/10.1093/molbev/msab247
Cavassim, M I A, Andersen, S U, Bataillon, T & Schierup, M H 2021, ' Recombination facilitates adaptive evolution in rhizobial soil bacteria ', Molecular Biology and Evolution, vol. 38, no. 12 . https://doi.org/10.1093/molbev/msab247
Homologous recombination is expected to increase natural selection efficacy by decoupling the fate of beneficial and deleterious mutations and by readily creating new combinations of beneficial alleles. Here, we investigate how the proportion of amin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d1f1f1dc310e1a0087aeb9c11a20e058
https://doi.org/10.1101/2021.01.20.427438
https://doi.org/10.1101/2021.01.20.427438
Autor:
En Tao Wang, Aregu Amsalu Aserse, Raúl Rivas González, José David Flores Félix, Anastasia P. Tampakaki, Marta Maluk, Encarna Velázquez, Arvind Gulati, Stéphane Boivin, M. Harun-or Rashid, Marc Lepetit, Euan K. James, Chang Fu Tian, Sara Moeskjær, Beatriz Jorrin, Sameh H. Youseif, Alexey M. Afonin, Michael F. Hynes, Evgeny E. Andronov, Martha-Helena Ramírez-Bahena, Gregory Kenicer, Alvaro Peix, J. Peter W. Young, Praveen Rahi, Benjamin J. Perry, Maria Izabel A. Cavassim
Publikováno v:
Young, J P W, Moeskjær, S, Afonin, A, Rahi, P, Maluk, M, James, E K, Cavassim, M I A, Rashid, M H O, Aserse, A A, Perry, B J, Wang, E T, Velázquez, E, Andronov, E E, Tampakaki, A, Félix, J D F, González, R R, Youseif, S H, Lepetit, M, Boivin, S, Jorrin, B, Kenicer, G J, Peix, Á, Hynes, M F, Ramírez-Bahena, M H, Gulati, A & Tian, C F 2021, ' Defining the rhizobium leguminosarum species complex ', Genes, vol. 12, no. 1, 111 . https://doi.org/10.3390/genes12010111
Genes
Genes, 2021, 12 (1), ⟨10.3390/genes12010111⟩
Genes, Vol 12, Iss 111, p 111 (2021)
Volume 12
Issue 1
Digital.CSIC. Repositorio Institucional del CSIC
instname
Genes
Genes, 2021, 12 (1), ⟨10.3390/genes12010111⟩
Genes, Vol 12, Iss 111, p 111 (2021)
Volume 12
Issue 1
Digital.CSIC. Repositorio Institucional del CSIC
instname
Bacteria currently included in Rhizobium leguminosarum are too diverse to be considered a single species, so we can refer to this as a species complex (the Rlc). We have found 429 publicly available genome sequences that fall within the Rlc and these
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::65605b3f2acae4654795ba846ea79c59
http://hdl.handle.net/10138/327314
http://hdl.handle.net/10138/327314
Autor:
J Peter W, Young, Sara, Moeskjær, Alexey, Afonin, Praveen, Rahi, Marta, Maluk, Euan K, James, Maria Izabel A, Cavassim, M Harun-Or, Rashid, Aregu Amsalu, Aserse, Benjamin J, Perry, En Tao, Wang, Encarna, Velázquez, Evgeny E, Andronov, Anastasia, Tampakaki, José David, Flores Félix, Raúl, Rivas González, Sameh H, Youseif, Marc, Lepetit, Stéphane, Boivin, Beatriz, Jorrin, Gregory J, Kenicer, Álvaro, Peix, Michael F, Hynes, Martha Helena, Ramírez-Bahena, Arvind, Gulati, Chang-Fu, Tian
Publikováno v:
Genes
Bacteria currently included in Rhizobium leguminosarum are too diverse to be considered a single species, so we can refer to this as a species complex (the Rlc). We have found 429 publicly available genome sequences that fall within the Rlc and these
Autor:
Sara Moeskjær, Mikkel H. Schierup, Bjarni J. Vilhjálmsson, Maria Izabel A. Cavassim, J. Peter W. Young, Camous Moslemi, Bryden Fields, Asger Bachmann, Stig U. Andersen
Publikováno v:
Cavassim, M I A, Moeskjær, S, Moslemi, C, Fields, B, Bachmann, A, Vilhjálmsson, B J, Schierup, M H, W Young, J P & Andersen, S U 2020, ' Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex ', Microbial Genomics, vol. 6, no. 4 . https://doi.org/10.1099/mgen.0.000351
Rhizobia supply legumes with fixed nitrogen using a set of symbiosis genes. These can cross rhizobium species boundaries, but it is unclear how many other genes show similar mobility. Here, we investigate inter-species introgression using de novo ass