Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Maria D. Ermolaeva"'
Publikováno v:
Plant Molecular Biology. 51:859-866
We estimate the timing of the Arabidopsis thaliana whole-genome duplication by means of phylogenetic and statistical analysis, and propose two possible scenarios for the duplication. The first one, based on the assumption that the duplicated segments
Publikováno v:
Bioinformatics. 17:1123-1130
As the pace of genome sequencing has accelerated, the need for highly accurate gene prediction systems has grown. Computational systems for identifying genes in prokaryotic genomes have sensitivities of 98–99% or higher (Delcher et al. , Nucleic Ac
Publikováno v:
The Journal of Physical Chemistry A. 103:1868-1875
The authors have implemented and tested a frozen density matrix (FDM) approximation to the basic divide and conquer (DC) semiempirical algorithm. Molecular dynamics and Monte Carlo simulations were performed to estimate the advantages of the method.
Publikováno v:
Ferroelectrics. 220:205-220
The dynamical properties of significantly nonlinear molecular systems with conformational mobility are discussed. The peculiarities of the figurative point movements along the potential energy hypersurfaces with a lot of saddle points are investigate
Autor:
Maria D. Ermolaeva
Publikováno v:
Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
A number of different strategies can be used to find operons and transcriptional units in bacterial and archaeal genomes. Some of these methods are purely computational: they rely only on the whole-genome sequence and gene predictions and do not requ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d8a035fa0125687282eae79c77569108
https://doi.org/10.1002/047001153x.g402306
https://doi.org/10.1002/047001153x.g402306
Publikováno v:
Bioinformatics (Oxford, England). 19(12)
Availability:The PseuRECA database is accesible at http://maine.ebi.ac.uk:8000/services/pseureca/ Contact: weinel.christian@mh-hannover.de * To whom correspondence should be addressed.
Publikováno v:
Plant molecular biology. 51(6)
We estimate the timing of the Arabidopsis thaliana whole-genome duplication by means of phylogenetic and statistical analysis, and propose two possible scenarios for the duplication. The first one, based on the assumption that the duplicated segments
Autor:
Steven L. Salzberg, Robert T. DeBoy, Hoda Khouri, William R. Jacobs, L. Carpenter, T. Utterback, Maria D. Ermolaeva, Owen White, Jonathan A. Eisen, J. C. Venter, Lowell Umayam, Robert J. Dodson, Erin Hickey, William R. Bishai, Arthur L. Delcher, Daniel H. Haft, Janice Weidman, Robert D. Fleischmann, A. Mikula, John Gill, Jeremy Peterson, William C. Nelson, David Alland, Michelle L. Gwinn, James F. Kolonay, Claire M. Fraser
Publikováno v:
ResearcherID
Virulence and immunity are poorly understood inMycobacterium tuberculosis.We sequenced the complete genome of theM. tuberculosisclinical strain CDC1551 and performed a whole-genome comparison with the laboratory strain H37Rv in order to identify poly
Autor:
John R. Yates, Lawrence W. Bergman, Leo H.M. van Lin, Martha Sedegah, Tamara Feldblyum, Jane M. Carlton, Azadeh Shoaibi, Bernard B. Suh, Jeremy Peterson, Jonathan E. Allen, Steven L. Salzberg, Jennifer Cho, Shelby L. Bidwell, Chris J. Janse, Michael Harris, Mihaela Pertea, Leda M. Cummings, Shamira J. Shallom, Mihai Pop, J. Dale Raine, Malcolm J. Gardner, Akhil B. Vaidya, Hamilton O. Smith, Maria D. Ermolaeva, Owen White, Steven B. Riedmuller, Daniel J. Carucci, J. Craig Venter, Robert E. Sinden, Stephen L. Hoffman, Joana C. Silva, Andrew P. Waters, Martin Shumway, Hean L. Koo, Jeremy D. Selengut, Taco W. A. Kooij, Claire M. Fraser, Susan Van Aken, Deirdre A. Cunningham, Daniel S. Kosack, John Quackenbush, Peter R. Preiser, Laurence Florens, Samuel V. Angiuoli
Publikováno v:
Nature. 419(6906)
Species of malaria parasite that infect rodents have long been used as models for malaria disease research. Here we report the whole-genome shotgun sequence of one species, Plasmodium yoelii yoelii, and comparative studies with the genome of the huma
Autor:
Bert Ely, Jonathan A. Eisen, Craig Stephens, Karen E. Nelson, Hoda Khouri, Lucy Shapiro, Isabel Potocka, Robert J. Dodson, Jyoti Shetty, Kevin Tran, John F. Heidelberg, Noriko Ohta, Owen White, Maria D. Ermolaeva, Jessica Vamathevan, Steven L. Salzberg, Teresa Utterback, Michael T. Laub, Alex M. Wolf, J. Craig Venter, Kristi Berry, M. R. K. Alley, Nikhil D. Phadke, Daniel H. Haft, A. Scott Durkin, William C. Nelson, Claire M. Fraser, Ian T. Paulsen, Michelle L. Gwinn, James F. Kolonay, Tamara Feldblyum, William C. Nierman, Janine R. Maddock, Austin Newton, M. B. Craven, John Smit, Robert T. DeBoy
The complete genome sequence of Caulobacter crescentus was determined to be 4,016,942 base pairs in a single circular chromosome encoding 3,767 genes. This organism, which grows in a dilute aquatic environment, coordinates the cell division cycle and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fa2c95e6f54adae6bee70b943c77c3e8
https://europepmc.org/articles/PMC31192/
https://europepmc.org/articles/PMC31192/