Zobrazeno 1 - 10
of 42
pro vyhledávání: '"Margaret R Woodhouse"'
Autor:
Rita K Hayford, Olivia C Haley, Ethalinda K Cannon, John L Portwood, Jack M Gardiner, Carson M Andorf, Margaret R Woodhouse
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-16 (2024)
Abstract Background Environmental stress factors, such as biotic and abiotic stress, are becoming more common due to climate variability, significantly affecting global maize yield. Transcriptome profiling studies provide insights into the molecular
Externí odkaz:
https://doaj.org/article/802466f5e32a471eb5f4a9fb37411d24
Autor:
Margaret R Woodhouse, James C Schnable, Brent S Pedersen, Eric Lyons, Damon Lisch, Shabarinath Subramaniam, Michael Freeling
Publikováno v:
PLoS Biology, Vol 8, Iss 6, p e1000409 (2010)
Previous work in Arabidopsis showed that after an ancient tetraploidy event, genes were preferentially removed from one of the two homologs, a process known as fractionation. The mechanism of fractionation is unknown. We sought to determine whether s
Externí odkaz:
https://doaj.org/article/a6de4c57185b492f936bc43b12ecc189
Publikováno v:
PLoS Genetics, Vol 6, Iss 5, p e1000949 (2010)
Much of the eukaryotic genome is known to be mobile, largely due to the movement of transposons and other parasitic elements. Recent work in plants and Drosophila suggests that mobility is also a feature of many nontransposon genes and gene families.
Externí odkaz:
https://doaj.org/article/1b2c4827b32a425f90129597905c4eba
Autor:
Jianing Liu, Arun S. Seetharam, Kapeel Chougule, Shujun Ou, Kyle W. Swentowsky, Jonathan I. Gent, Victor Llaca, Margaret R. Woodhouse, Nancy Manchanda, Gernot G. Presting, David A. Kudrna, Magdy Alabady, Candice N. Hirsch, Kevin A. Fengler, Doreen Ware, Todd P. Michael, Matthew B. Hufford, R. Kelly Dawe
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-17 (2020)
Abstract Creating gapless telomere-to-telomere assemblies of complex genomes is one of the ultimate challenges in genomics. We use two independent assemblies and an optical map-based merging pipeline to produce a maize genome (B73-Ab10) composed of 6
Externí odkaz:
https://doaj.org/article/a5e8887863d14b13bef268c7f7f78319
Autor:
Margaret R Woodhouse, John L Portwood, Shatabdi Sen, Rita K Hayford, Jack M Gardiner, Ethalinda K Cannon, Lisa C Harper, Carson M Andorf
Publikováno v:
GENETICS. 224
Protein structures play an important role in bioinformatics, such as in predicting gene function or validating gene model annotation. However, determining protein structure was, until now, costly and time-consuming, which resulted in a structural bio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b44b684fc7ac8719b3798fd250e4ea8a
https://doi.org/10.1093/genetics/iyad016
https://doi.org/10.1093/genetics/iyad016
Autor:
Carson M Andorf, Shatabdi Sen, Rita K Hayford, John L Portwood, Ethalinda K Cannon, Lisa C Harper, Jack M Gardiner, Taner Z Sen, Margaret R Woodhouse
Methods to predict orthology play an important role in bioinformatics for phylogenetic analysis by identifying orthologs within or across any level of biological classification. Sequence-based reciprocal best hit approaches are commonly used in funct
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3a58760c1007f31628a8674e39b3494c
https://doi.org/10.1101/2022.11.10.516002
https://doi.org/10.1101/2022.11.10.516002
Autor:
Carson M. Andorf, John L. Portwood, James C. Schnable, Margaret R. Woodhouse, David A. Schott, Michael Freeling, Justin W. Walley, Shatabdi Sen
Publikováno v:
Bioinformatics. 38:236-242
Motivation Over the last decade, RNA-Seq whole-genome sequencing has become a widely used method for measuring and understanding transcriptome-level changes in gene expression. Since RNA-Seq is relatively inexpensive, it can be used on multiple genom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f8deca5fd4b26026829b4cc87d70ace
https://doi.org/10.1093/bioinformatics/btab604
https://doi.org/10.1093/bioinformatics/btab604
Autor:
Carson M. Andorf, Taner Z. Sen, Priyanka Bhandary, Margaret R. Woodhouse, Roger P. Wise, Sagnik Banerjee
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-26 (2021)
BMC Bioinformatics
BMC Bioinformatics
Background Gene annotation in eukaryotes is a non-trivial task that requires meticulous analysis of accumulated transcript data. Challenges include transcriptionally active regions of the genome that contain overlapping genes, genes that produce nume
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d7bb0421982d6eceaabc7446da47d2aa
https://doaj.org/article/81101080cd6f454e9af112536327fb23
https://doaj.org/article/81101080cd6f454e9af112536327fb23
Autor:
R. Kelly Dawe, Jianing Liu, Kapeel Chougule, Adam M. Phillippy, Chen-Shan Chin, Sharon Wei, Brian P. Walenz, Sergey Koren, Samantha J. Snodgrass, Brett T. Hannigan, Joshua C. Stein, Arkarachai Fungtammasan, Nancy Manchanda, Arun S. Seetharam, Margaret R. Woodhouse, Kevin Fengler, Sarah Pedersen, Candice N. Hirsch, Shujun Ou, Matthew B. Hufford, Doreen Ware, Victor Llaca, Amanda M. Gilbert, David E. Hufnagel
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Nature Communications
Nature Communications
Improvements in long-read data and scaffolding technologies have enabled rapid generation of reference-quality assemblies for complex genomes. Still, an assessment of critical sequence depth and read length is important for allocating limited resourc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e80e0dbb5b920674479f8508b45c205a
https://doaj.org/article/9bfad55a4173428f8acffe7c51e13452
https://doaj.org/article/9bfad55a4173428f8acffe7c51e13452
Autor:
Ravi V. Mural, Guangchao Sun, Marcin Grzybowski, Michael C. Tross, Hongyu Jin, Christine Smith, Linsey Newton, Carson M. Andorf, Margaret R. Woodhouse, Addie M. Thompson, Brandi Sigmon, James C. Schnable
Classical genetic studies have identified many cases of pleiotropy where mutations in individual genes alter many different phenotypes. Quantitative genetic studies of natural genetic variants frequently examine one or a few traits, limiting their po
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::be629c84c26471f5c6adaef6d056f44a
https://doi.org/10.1101/2022.02.25.480753
https://doi.org/10.1101/2022.02.25.480753