Zobrazeno 1 - 10
of 42
pro vyhledávání: '"Margaret R, Woodhouse"'
Autor:
Hye-Seon Kim, Olivia C. Haley, John L. Portwood II, Stephen Harding, Robert H. Proctor, Margaret R. Woodhouse, Taner Z. Sen, Carson M. Andorf
Publikováno v:
BMC Microbiology, Vol 24, Iss 1, Pp 1-13 (2024)
Abstract Background The genus Fusarium poses significant threats to food security and safety worldwide because numerous species of the fungus cause destructive diseases and/or mycotoxin contamination in crops. The adverse effects of climate cha
Externí odkaz:
https://doaj.org/article/d9c8459f48ea46279e4a610a601ed7ff
Autor:
Rita K Hayford, Olivia C Haley, Ethalinda K Cannon, John L Portwood, Jack M Gardiner, Carson M Andorf, Margaret R Woodhouse
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-16 (2024)
Abstract Background Environmental stress factors, such as biotic and abiotic stress, are becoming more common due to climate variability, significantly affecting global maize yield. Transcriptome profiling studies provide insights into the molecular
Externí odkaz:
https://doaj.org/article/802466f5e32a471eb5f4a9fb37411d24
Autor:
Margaret R. Woodhouse, Ethalinda K. Cannon, John L. Portwood, Lisa C. Harper, Jack M. Gardiner, Mary L. Schaeffer, Carson M. Andorf
Publikováno v:
BMC Plant Biology, Vol 21, Iss 1, Pp 1-10 (2021)
Abstract Research in the past decade has demonstrated that a single reference genome is not representative of a species’ diversity. MaizeGDB introduces a pan-genomic approach to hosting genomic data, leveraging the large number of diverse maize gen
Externí odkaz:
https://doaj.org/article/8daaffcde9b14141b1064649dfd2e59f
Autor:
Jianing Liu, Arun S. Seetharam, Kapeel Chougule, Shujun Ou, Kyle W. Swentowsky, Jonathan I. Gent, Victor Llaca, Margaret R. Woodhouse, Nancy Manchanda, Gernot G. Presting, David A. Kudrna, Magdy Alabady, Candice N. Hirsch, Kevin A. Fengler, Doreen Ware, Todd P. Michael, Matthew B. Hufford, R. Kelly Dawe
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-17 (2020)
Abstract Creating gapless telomere-to-telomere assemblies of complex genomes is one of the ultimate challenges in genomics. We use two independent assemblies and an optical map-based merging pipeline to produce a maize genome (B73-Ab10) composed of 6
Externí odkaz:
https://doaj.org/article/a5e8887863d14b13bef268c7f7f78319
Autor:
Nancy Manchanda, John L. Portwood, Margaret R. Woodhouse, Arun S. Seetharam, Carolyn J. Lawrence-Dill, Carson M. Andorf, Matthew B. Hufford
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-9 (2020)
Abstract Background Genome assemblies are foundational for understanding the biology of a species. They provide a physical framework for mapping additional sequences, thereby enabling characterization of, for example, genomic diversity and difference
Externí odkaz:
https://doaj.org/article/9e4eabcbbc544226a9dbe9f4e67ba9b1
Publikováno v:
BMC Plant Biology, Vol 20, Iss 1, Pp 1-11 (2020)
Abstract Background Maize experienced a whole-genome duplication event approximately 5 to 12 million years ago. Because this event occurred after speciation from sorghum, the pre-duplication subgenomes can be partially reconstructed by mapping synten
Externí odkaz:
https://doaj.org/article/e34f022fefd54787b537ff976d93c3e9
Publikováno v:
Current Plant Biology, Vol 11, Iss C, Pp 2-11 (2017)
The variety and quantity of data being produced by biological research has grown dramatically in recent years, resulting in an expansion of our understanding of biological systems. However, this abundance of data has brought new challenges, especiall
Externí odkaz:
https://doaj.org/article/2da49bbdb233484b812e91c7becc4e2a
Autor:
Margaret R Woodhouse, John L Portwood, Shatabdi Sen, Rita K Hayford, Jack M Gardiner, Ethalinda K Cannon, Lisa C Harper, Carson M Andorf
Publikováno v:
GENETICS. 224
Protein structures play an important role in bioinformatics, such as in predicting gene function or validating gene model annotation. However, determining protein structure was, until now, costly and time-consuming, which resulted in a structural bio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b44b684fc7ac8719b3798fd250e4ea8a
https://doi.org/10.1093/genetics/iyad016
https://doi.org/10.1093/genetics/iyad016
Autor:
Carson M Andorf, Shatabdi Sen, Rita K Hayford, John L Portwood, Ethalinda K Cannon, Lisa C Harper, Jack M Gardiner, Taner Z Sen, Margaret R Woodhouse
Methods to predict orthology play an important role in bioinformatics for phylogenetic analysis by identifying orthologs within or across any level of biological classification. Sequence-based reciprocal best hit approaches are commonly used in funct
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3a58760c1007f31628a8674e39b3494c
https://doi.org/10.1101/2022.11.10.516002
https://doi.org/10.1101/2022.11.10.516002
Autor:
Carson M. Andorf, John L. Portwood, James C. Schnable, Margaret R. Woodhouse, David A. Schott, Michael Freeling, Justin W. Walley, Shatabdi Sen
Publikováno v:
Bioinformatics. 38:236-242
Motivation Over the last decade, RNA-Seq whole-genome sequencing has become a widely used method for measuring and understanding transcriptome-level changes in gene expression. Since RNA-Seq is relatively inexpensive, it can be used on multiple genom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f8deca5fd4b26026829b4cc87d70ace
https://doi.org/10.1093/bioinformatics/btab604
https://doi.org/10.1093/bioinformatics/btab604