Zobrazeno 1 - 10
of 40
pro vyhledávání: '"Marcus C Chibucos"'
Autor:
Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H Brush, Bill Bug, Marcus C Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Daniel Schober, Barry Smith, Larisa N Soldatova, Christian J Stoeckert, Chris F Taylor, Carlo Torniai, Jessica A Turner, Randi Vita, Patricia L Whetzel, Jie Zheng
Publikováno v:
PLoS ONE, Vol 11, Iss 4, p e0154556 (2016)
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. OBI re-uses ontologies that provide
Externí odkaz:
https://doaj.org/article/f988ee11ce904507a3a11c59e8f2e477
Autor:
Samuel A Shelburne, Nadim J Ajami, Marcus C Chibucos, Hannah C Beird, Jeffrey Tarrand, Jessica Galloway-Peña, Nathan Albert, Roy F Chemaly, Shashank S Ghantoji, Lisa Marsh, Naveen Pemmaraju, Michael Andreeff, Elizabeth J Shpall, Jennifer A Wargo, Katayoun Rezvani, Amin Alousi, Vincent M Bruno, Phillip A Futreal, Joseph F Petrosino, Dimitrios P Kontoyiannis
Publikováno v:
PLoS ONE, Vol 10, Iss 11, p e0139851 (2015)
Disease can be conceptualized as the result of interactions between infecting microbe and holobiont, the combination of a host and its microbial communities. It is likely that genomic variation in the host, infecting microbe, and commensal microbiota
Externí odkaz:
https://doaj.org/article/da893cf3d97644d38a253b03fb6e28fe
Autor:
Michael S Humphrys, Todd Creasy, Yezhou Sun, Amol C Shetty, Marcus C Chibucos, Elliott F Drabek, Claire M Fraser, Umar Farooq, Naomi Sengamalay, Sandy Ott, Huizhong Shou, Patrik M Bavoil, Anup Mahurkar, Garry S A Myers
Publikováno v:
PLoS ONE, Vol 8, Iss 12, p e80597 (2013)
We developed an RNA-Seq-based method to simultaneously capture prokaryotic and eukaryotic expression profiles of cells infected with intracellular bacteria. As proof of principle, this method was applied to Chlamydia trachomatis-infected epithelial c
Externí odkaz:
https://doaj.org/article/59def294e3484609874a64f23c588b1b
Autor:
Mónica C. Silva, Joana C. Silva, James B. Munro, Marcus C. Chibucos, Maria M. Coelho, Sean C. Daugherty
Publikováno v:
Scientific Reports, Vol 10, Iss 1, Pp 1-11 (2020)
Scientific Reports
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Scientific Reports
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Olfactory receptors (ORs), encoded by the largest vertebrate multigene family, enable the detection of thousands of unique odorants in the environment and consequently play a critical role in species survival. Here, we advance our knowledge of OR gen
Autor:
Marcus C. Chibucos, Suvarna Nandendla, Peter I-Fan Wu, Michelle G. Giglio, James C. Hu, Sandra A. LaBonte, Deborah A. Siegele
Publikováno v:
Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-8 (2019)
Journal of Biomedical Semantics
Journal of Biomedical Semantics
Background Microbial genetics has formed a foundation for understanding many aspects of biology. Systematic annotation that supports computational data mining should reveal further insights for microbes, microbiomes, and conserved functions beyond mi
Autor:
Shoshannah Ball, Rebecca Tauber, Marcus C. Chibucos, Pascale Gaudet, Elizabeth T. Hobbs, Elvira Mitraka, Dustin Olley, Suvarna Nadendla, Christopher J. Mungall, Ivan Erill, Deborah A. Siegele, Michelle G. Giglio, James C. Hu, James B. Munro, Lynn M. Schriml
Publikováno v:
Nucleic Acids Research
Nucleic acids research, vol 47, iss D1
Giglio, Michelle; Tauber, Rebecca; Nadendla, Suvarna; Munro, James; Olley, Dustin; Ball, Shoshannah; et al.(2019). ECO, the Evidence & Conclusion Ontology: community standard for evidence information.. Nucleic acids research, 47(D1), D1186-D1194. doi: 10.1093/nar/gky1036. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/8r16010f
Nucleic acids research, vol 47, iss D1
Giglio, Michelle; Tauber, Rebecca; Nadendla, Suvarna; Munro, James; Olley, Dustin; Ball, Shoshannah; et al.(2019). ECO, the Evidence & Conclusion Ontology: community standard for evidence information.. Nucleic acids research, 47(D1), D1186-D1194. doi: 10.1093/nar/gky1036. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/8r16010f
The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product
Autor:
Damion M. Dooley, Hande Küçük McGinty, James A. Overton, Irene Y Feng, Matthew H. Brush, Christian J. Stoeckert, Michelle G. Giglio, Daniel C. Berrios, Bjoern Peters, Marcus C. Chibucos, Sagar B Jain, Mark A. Miller, Aisyah Yu Lin, Gully A. P. C. Burns, Mathias Brochhausen, Yongqun He, Randi Vita, Rebecca C. Jackson, Jie Zheng, John Judkins, Richard H. Scheuermann
Publikováno v:
Database: The Journal of Biological Databases and Curation
The Ontology for Biomedical Investigations (OBI) underwent a focused review of assay term annotations, logic and hierarchy with a goal to improve and standardize these terms. As a result, inconsistencies in W3C Web Ontology Language (OWL) expressions
Autor:
Helen, Attrill, Pascale, Gaudet, Rachael P, Huntley, Ruth C, Lovering, Stacia R, Engel, Sylvain, Poux, Kimberly M, Van Auken, George, Georghiou, Marcus C, Chibucos, Tanya Z, Berardini, Valerie, Wood, Harold, Drabkin, Petra, Fey, Penelope, Garmiri, Midori A, Harris, Tony, Sawford, Leonore, Reiser, Rebecca, Tauber, Sabrina, Toro
Publikováno v:
Database: The Journal of Biological Databases and Curation
High-throughput studies constitute an essential and valued source of information for researchers. However, high-throughput experimental workflows are often complex, with multiple data sets that may contain large numbers of false positives. The repres
Autor:
Rebecca Tauber, Robert J. Dodson, Marek S. Skrzypek, Raymond Lee, Valerie Wood, Paul W. Sternberg, C. Rivoire, Nancy H. Campbell, E. Hatton-Ellis, M. Rodriguez-Lopez, Elena Speretta, D. S. Osumi, Alix J. Rey, A. Mac-Dougall, Jane E. Mendel, Christopher J. Mungall, Helen Parkinson, Maria Jesus Martin, Pascale Gaudet, A. Stutz, Nathan Dunn, Gillian Millburn, Kate Warner, K. Axelsen, C. Arighi, Mary E. Dolan, M. J. Kesling, Barbara Kramarz, Seth Carbon, Joshua L. Goodman, Rachael P. Huntley, Anjali Shrivastava, Daniela Raciti, C. Wu, Victor B. Strelets, Steven J Marygold, H. Drabkin, M. Magrane, Benjamin M. Good, A. Shrivatsav Vp, Lorna Richardson, James P. Balhoff, P. Lemercier, E. Bakker, Amaia Sangrador-Vegas, Marc Feuermann, Paul Thomas, D. Lieberherr, J. Cho, Hans-Michael Müller, Robert S. Nash, Leonore Reiser, Birgit H M Meldal, Neil D. Rawlings, N. N. Hyka, D. A. Natale, Paola Roncaglia, Paul Denny, Michelle G. Giglio, Judith A. Blake, S. Sundaram, Shankar Subramaniam, Marcus C. Chibucos, Kevin A. MacPherson, S. Poux, Karen R. Christie, Mary Shimoyama, Eva Huala, Colin Logie, Huaiyu Mi, Felix Gondwe, K. Pichler, Petra Fey, Deborah A. Siegele, Phani V. Garapati, N. Tyagi, J L De Pons, Alex Bateman, Melinda R. Dwinell, Pablo Porras, Giulia Antonazzo, Midori A. Harris, Y. Lussi, Stuart R. Miyasato, Li Ni, K. Laiho, A. Estreicher, Travis K. Sheppard, Edith D. Wong, M. C. Harrison, H. Chen, S. Basu, Sandra A. LaBonte, Margaret Duesbury, E. Hartline, Sibyl Gao, Vítor Trovisco, Jacqueline Hayles, George Georghiou, Rex L. Chisholm, Kathleen Falls, S. Poudel, James C. Hu, G. T. Hayman, Kim Rutherford, F. Jungo, Hsin-Yu Chang, E. Boutet, Robert D. Finn, Alex L. Mitchell, Stan Laulederkind, J. H. Rawson, Marek Tutaj, Vanessa Acquaah, Peter D'Eustachio, G. Keller, L. Breuza, P. Garmiri, Nicholas H. Brown, Laurent-Philippe Albou, Antonia Lock, Nomi L. Harris, U. Hinz, Matthew Berriman, R. Britto, Rossana Zaru, Suzanna E. Lewis, N. Gruaz-Gumowski, Livia Perfetto, Matt Simison, Martin Kuiper, Shuai Weng, M. Tognolli, G. Dos Santos, Elizabeth R Bolton, Xiaosong Huang, A. Gos, P. Masson, David B. Emmert, Lisa Matthews, C. Casals-Casas, Kevin L. Howe, N. T. Del, Sandra Orchard, L. Famiglietti, Doug Howe, T. Sawford, T. E.M. Jones, Stephen G. Oliver, Kalpana Karra, S. Fexova, Tremayne Mushayahama, Dustin Ebert, Jim Thurmond, Ruth C. Lovering, E. Coudert, A. Bridge, Suzi Aleksander, Suvarna Nadendla, Christian A. Grove, David P. Hill, J. M. Cherry, M. C. Blatter, K. Van Auken, H. Bye-A-Jee, B. L. Dunn, A. Lreid, Sabrina Toro, Monte Westerfield, Z. Xie, A. Auchincloss, I. Pedruzzi, Anushya Muruganujan, B. Bely, S. H. Ahmad, Stacia R. Engel, Shur-Jen Wang, Gail Binkley, Lincoln Stein, Pinglei Zhou, G. P. Argoud, Marcio Luis Acencio, C. Hulo, Jürg Bähler, Juancarlos Chan, P. C. Ng, Helen Attrill, Mélanie Courtot, A. Ignatchenko, Tanya Z. Berardini, D. Sitnikov, Eric Douglass, A. Shypitsyna
Publikováno v:
Nucleic Acids Research, 47, D1, pp. D330-D338
Nucleic Acids Research
gky1055
Nucleic Acids Research, 47, D330-D338
Nucleic Acids Research
gky1055
Nucleic Acids Research, 47, D330-D338
The Gene Ontology resource (GO; http://geneontology.org) provides structured, computable knowledge regarding the functions of genes and gene products. Founded in 1998, GO has become widely adopted in the life sciences, and its contents are under cont
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e74fd21995f07297f1ffd1fffedaa682
https://hdl.handle.net/2066/214628
https://hdl.handle.net/2066/214628
Publikováno v:
Pathogens and Disease. 75
Candida albicans is the predominant cause of vulvovaginal candidiasis (VVC). Little is known regarding the genetic diversity of Candida spp. in the vagina or the microvariations in strains over time that may contribute to the development of VVC. This