Zobrazeno 1 - 10
of 40
pro vyhledávání: '"Marco Oliva"'
Publikováno v:
Algorithms for Molecular Biology, Vol 19, Iss 1, Pp 1-14 (2024)
Abstract FM-indexes are crucial data structures in DNA alignment, but searching with them usually takes at least one random access per character in the query pattern. Ferragina and Fischer [1] observed in 2007 that word-based indexes often use fewer
Externí odkaz:
https://doaj.org/article/5d545f4b58b649eaad33789914714512
Autor:
Ilya B. Slizovskiy, Marco Oliva, Jonathen K. Settle, Lidiya V. Zyskina, Mattia Prosperi, Christina Boucher, Noelle R. Noyes
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-24 (2022)
Abstract Background Metagenomic data can be used to profile high-importance genes within microbiomes. However, current metagenomic workflows produce data that suffer from low sensitivity and an inability to accurately reconstruct partial or full geno
Externí odkaz:
https://doaj.org/article/d5dfa1529441450bbc40f8fc1d41287b
Autor:
Simone Marini, Marco Oliva, Ilya B. Slizovskiy, Noelle Robertson Noyes, Christina Boucher, Mattia Prosperi
Publikováno v:
Frontiers in Genetics, Vol 12 (2021)
Antimicrobial resistance (AMR) is a significant and growing public health threat. Sequencing of bacterial isolates is becoming more common, and therefore automatic identification of resistant bacterial strains is of pivotal importance for efficient,
Externí odkaz:
https://doaj.org/article/3ab13cef5923467c9e71e213f63cbdad
Autor:
Pasquale Giorio, Valerio Cirillo, Martina Caramante, Marco Oliva, Gianpiero Guida, Accursio Venezia, Stefania Grillo, Albino Maggio, Rossella Albrizio
Publikováno v:
Plants, Vol 9, Iss 6, p 795 (2020)
Salt stress is one of the most impactful abiotic stresses that plants must cope with. Plants’ ability to tolerate salt stress relies on multiple mechanisms, which are associated with biomass and yield reductions. Sweet pepper is a salt-sensitive cr
Externí odkaz:
https://doaj.org/article/a14bd5e3b3d04fb98c9f99495edfb1a3
Autor:
Massimiliano Rossi, Marco Oliva, Paola Bonizzoni, Ben Langmead, Travis Gagie, Christina Boucher
Publikováno v:
J Comput Biol
Efficiently finding maximal exact matches (MEMs) between a sequence read and a database of genomes is a key first step in read alignment. But until recently, it was unknown how to build a data structure in [Image: see text] space that supports effici
Publikováno v:
J Comput Biol
Recently, Gagie et al. proposed a version of the FM-index, called the r-index, that can store thousands of human genomes on a commodity computer. Then Kuhnle et al. showed how to build the r-index efficiently via a technique called prefix-free parsin
MotivationPangenomics alignment has emerged as an opportunity to reduce bias in biomedical research. Traditionally, short read aligners—such as Bowtie and BWA—were used to index a single reference genome, which was then used to find approximate a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::aa858487b4e3ab971481d4cbcb25299b
https://doi.org/10.1101/2023.01.26.525723
https://doi.org/10.1101/2023.01.26.525723
Publikováno v:
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
Publikováno v:
Revista de la Facultad de Odontología. 30:36-43
Objective. Morphologically characterize the ultrastructure of some nationally manufactured bone matrices available in the local commercial market in order to determine the main characteristics that allow their use in the dental rehabilitation of atro
Autor:
Marco, Oliva, Cenzato, Davide, Massimiliano, Rossi, Liptak, Zsuzsanna, Travis, Gagie, Christina, Boucher
Publikováno v:
2022 Data Compression Conference (DCC).