Zobrazeno 1 - 10
of 90
pro vyhledávání: '"Marcin P Joachimiak"'
Autor:
Sabrina Toro, Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn O‘Neil, David Osumi-Sutherland, Aleix Puig-Barbe, Justin T. Reese, Leonore Reiser, Sofia MC. Robb, Troy Ruemping, James Seager, Eric Sid, Ray Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall
Publikováno v:
Journal of Biomedical Semantics, Vol 15, Iss 1, Pp 1-16 (2024)
Abstract Background Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their construction
Externí odkaz:
https://doaj.org/article/d2e5c04897b04c518fa065aab65ad77e
Autor:
Joshua Ladau, Eoin L. Brodie, Nicola Falco, Ishan Bansal, Elijah B. Hoffman, Marcin P. Joachimiak, Ana M. Mora, Angelica M. Walker, Haruko M. Wainwright, Yulun Wu, Mirko Pavicic, Daniel Jacobson, Matthias Hess, James B. Brown, Katrina Abuabara
Publikováno v:
Infectious Disease Modelling, Vol 9, Iss 2, Pp 634-643 (2024)
Objectives: We aim to estimate geographic variability in total numbers of infections and infection fatality ratios (IFR; the number of deaths caused by an infection per 1,000 infected people) when the availability and quality of data on disease burde
Externí odkaz:
https://doaj.org/article/f319489268a0448ca817662d6bc9ed64
Autor:
Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner, Lawrence E. Hunter
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-22 (2024)
Abstract Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significant integration challenge
Externí odkaz:
https://doaj.org/article/2ba11bcf971c40478fb1f6a852218703
Autor:
Brook E. Santangelo, Madison Apgar, Angela Sofia Burkhart Colorado, Casey G. Martin, John Sterrett, Elena Wall, Marcin P. Joachimiak, Lawrence E. Hunter, Catherine A. Lozupone
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
Advances in high-throughput technologies have enhanced our ability to describe microbial communities as they relate to human health and disease. Alongside the growth in sequencing data has come an influx of resources that synthesize knowledge surroun
Externí odkaz:
https://doaj.org/article/1c818083da77485aa6fa98f555a8c6ab
Autor:
Helen Park, Marcin P. Joachimiak, Sean P. Jungbluth, Ziming Yang, William J. Riehl, R. Shane Canon, Adam P. Arkin, Paramvir S. Dehal
Publikováno v:
mSystems, Vol 9, Iss 1 (2024)
ABSTRACTMicrobial communities have evolved to colonize all ecosystems of the planet, from the deep sea to the human gut. Microbes survive by sensing, responding, and adapting to immediate environmental cues. This process is driven by signal transduct
Externí odkaz:
https://doaj.org/article/a625ab5429de49c5ae5cd1501a9ffcc7
Autor:
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Publikováno v:
mSystems, Vol 6, Iss 3 (2021)
Externí odkaz:
https://doaj.org/article/8088343836d242e09be9d0e6184d219d
Autor:
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Publikováno v:
mSystems, Vol 6, Iss 1 (2021)
ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critica
Externí odkaz:
https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9
Autor:
Justin T. Reese, Deepak Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
Publikováno v:
Patterns, Vol 2, Iss 1, Pp 100155- (2021)
Summary: Integrated, up-to-date data about SARS-CoV-2 and COVID-19 is crucial for the ongoing response to the COVID-19 pandemic by the biomedical research community. While rich biological knowledge exists for SARS-CoV-2 and related viruses (SARS-CoV,
Externí odkaz:
https://doaj.org/article/9e19b29da8ec431ca617fc2a36eacbf0
Autor:
Marcin P Joachimiak
Publikováno v:
PLoS Neglected Tropical Diseases, Vol 15, Iss 1, p e0008895 (2021)
A wide variety of symptoms is associated with Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection, and these symptoms can overlap with other conditions and diseases. Knowing the distribution of symptoms across diseases and individu
Externí odkaz:
https://doaj.org/article/59137bd56082422f978bc17746258247
Publikováno v:
Scientometrics. 127:2313-2349
Multiple studies have investigated bibliometric factors predictive of the citation count a research article will receive. In this article, we go beyond bibliometric data by using a range of machine learning techniques to find patterns predictive of c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ac59497e5bce2c9cb928a5fd60df3678
https://doi.org/10.1007/s11192-022-04314-9
https://doi.org/10.1007/s11192-022-04314-9