Zobrazeno 1 - 10
of 52
pro vyhledávání: '"Marcin Magnus"'
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-15 (2019)
Abstract Background The understanding of the importance of RNA has dramatically changed over recent years. As in the case of proteins, the function of an RNA molecule is encoded in its tertiary structure, which in turn is determined by the molecule
Externí odkaz:
https://doaj.org/article/8bff1f97adab4e51ab2b602ab0a344ad
Autor:
Marcin Magnus, Zhichao Miao
Publikováno v:
Methods in Molecular Biology ISBN: 9781071627679
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e179e4fd05fc29eb1ef7fbf35c7c2b84
https://doi.org/10.1007/978-1-0716-2768-6_16
https://doi.org/10.1007/978-1-0716-2768-6_16
Autor:
Marcin Magnus
Publikováno v:
Nucleic acids research.
Significant improvements have been made in the efficiency and accuracy of RNA 3D structure prediction methods in recent years; however, many tools developed in the field stay exclusive to only a few bioinformatic groups. To perform a complete RNA 3D
Autor:
Maciej Antczak, Jakub Wiedemann, Janusz M. Bujnicki, Eric Westhof, Yang Cao, Marcin Magnus, Tomasz Zok, Zhichao Miao, Piotr Lukasiak, Marta Szachniuk
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2020, ⟨10.1093/nar/gkz1108⟩
Nucleic Acids Research, Oxford University Press, 2020, ⟨10.1093/nar/gkz1108⟩
Significant improvements have been made in the efficiency and accuracy of RNA 3D structure prediction methods during the succeeding challenges of RNA-Puzzles, a community-wide effort on the assessment of blind prediction of RNA tertiary structures. T
We present RNA Masonry, a computer program and a web service for a fully automated assembly of RNA fragments into geometrically plausible models fulfilling user-provided secondary structure constraints and restraints on tertiary contacts and Small An
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::50197c8d046b1d83b0bfc9a44102e184
https://doi.org/10.1101/2021.02.08.430198
https://doi.org/10.1101/2021.02.08.430198
Autor:
Joanna Sarzynska, David M.J. Lilley, Yi Xiao, Peinan Zhao, Michal J. Boniecki, Dinshaw J. Patel, Astha Joshi, Yuanzhe Zhou, Radoslaw Pluta, Clarence Yu Cheng, Lin Huang, Fang-Chieh Chou, Zhichao Miao, François Major, Li-Zhen Sun, Chenhan Zhao, Marcin Magnus, Andrey Krokhotin, Rhiju Das, Zhenzhen Zhang, Joseph D. Yesselman, Jakub Wiedemann, Yijin Liu, Olivier Mailhot, Xiaojun Xu, Andrew M. Watkins, Robert T. Batey, Yangwei Jiang, Caleb Geniesse, Maciej Antczak, Adriana Żyła, Siqi Tian, Aiming Ren, Nikolay V. Dokholyan, Thomas H. Mann, Tomasz Zok, Janusz M. Bujnicki, Shi-Jie Chen, Ryszard W. Adamiak, Eric Westhof, Barbara L. Golden, Jian Wang, Feng Ding, Marta Szachniuk, Mariusz Popenda, Paweł Piątkowski, Dong Zhang, Yi Cheng, Yi Zhang, Jun Wang
Publikováno v:
RNA
RNA, Cold Spring Harbor Laboratory Press, 2020, 26 (8), pp.982-995. ⟨10.1261/rna.075341.120⟩
RNA, Cold Spring Harbor Laboratory Press, 2020, 26 (8), pp.982-995. ⟨10.1261/rna.075341.120⟩
International audience; RNA-Puzzles is a collective endeavor dedicated to the advancement and improvement of RNA 3D structure prediction. With agreement from crystallographers, the RNA structures are predicted by various groups before the publication
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce737604dde88ce4f4cd65a4a5aab7cf
https://hal.archives-ouvertes.fr/hal-02966062
https://hal.archives-ouvertes.fr/hal-02966062
Autor:
Pietro Boccaletto, Tomasz K Wirecki, Filip Stefaniak, Catarina F. Almeida, Astha Astha, Stanislaw Dunin-Horkawicz, Adriana Zyla, Elzbieta Jankowska, Radoslaw Pluta, Michal J. Boniecki, Marcin Magnus, Janusz M. Bujnicki, Błażej Bagiński
Publikováno v:
Nucleic Acids Research
RNArchitecture is a database that provides a comprehensive description of relationships between known families of structured non-coding RNAs, with a focus on structural similarities. The classification is hierarchical and similar to the system used i
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-15 (2019)
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-15 (2019)
Background The understanding of the importance of RNA has dramatically changed over recent years. As in the case of proteins, the function of an RNA molecule is encoded in its tertiary structure, which in turn is determined by the molecule’s sequen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0287149ac614570f875691bc77ffa154
https://doi.org/10.21203/rs.2.10793/v3
https://doi.org/10.21203/rs.2.10793/v3
Publikováno v:
Nucleic Acids Research
RNA function in many biological processes depends on the formation of three-dimensional (3D) structures. However, RNA structure is difficult to determine experimentally, which has prompted the development of predictive computational methods. Here, we
Autor:
Greggory M. Rice, Dong Zhang, Yi Xiao, François Major, Joseph A. Piccirilli, Thomas H. Mann, Fang-Chieh Chou, Marcin Biesiada, Clarence Yu Cheng, Feng Ding, Arpit Tandon, Dinshaw J. Patel, Kevin M. Weeks, Alexander J. Becka, Joanna Sarzynska, John SantaLucia, Ryszard W. Adamiak, Kalli Kappel, Rhiju Das, Wipapat Kladwang, Zhichao Miao, Michal J. Boniecki, Robert T. Batey, Katarzyna J. Purzycka, Tomasz Zok, Caleb Geniesse, Aiming Ren, Wayne K. Dawson, Maciej Antczak, Janusz M. Bujnicki, Shi-Jie Chen, Andrey Krokhotin, Jian Wang, Katarzyna Pachulska-Wieczorek, Siqi Tian, Nikolay V. Dokholyan, Xiaojun Xu, Marcin Magnus, Grzegorz Łach, Marta Szachniuk, Stanislaw Dunin-Horkawicz, Jeremiah J. Trausch, Eric Westhof, Benfeard Williams, Mariusz Popenda, Adrian R. Ferré-D'Amaré
Publikováno v:
RNA
RNA, Cold Spring Harbor Laboratory Press, 2017, 23 (5), pp.655-672. ⟨10.1261/rna.060368.116⟩
RNA, Cold Spring Harbor Laboratory Press, 2017, 23 (5), pp.655-672. ⟨10.1261/rna.060368.116⟩
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch aptamers and puzzle 7, a ribozyme structure, are included in this r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c02529620f2174f01acae09e88a752f7
https://hal.archives-ouvertes.fr/hal-02171291
https://hal.archives-ouvertes.fr/hal-02171291