Zobrazeno 1 - 10
of 83
pro vyhledávání: '"Marc T Facciotti"'
Autor:
Erin A Becker, Andrew I Yao, Phillip M Seitzer, Tobias Kind, Ting Wang, Rich Eigenheer, Katie S Y Shao, Vladimir Yarov-Yarovoy, Marc T Facciotti
Publikováno v:
PLoS ONE, Vol 11, Iss 6, p e0156543 (2016)
Opsins are photosensitive proteins catalyzing light-dependent processes across the tree of life. For both microbial (type 1) and metazoan (type 2) opsins, photosensing depends upon covalent interaction between a retinal chromophore and a conserved ly
Externí odkaz:
https://doaj.org/article/610b97071a5a4bd5adf8ea2f004e9b25
Autor:
Tie Koide, David J Reiss, J Christopher Bare, Wyming Lee Pang, Marc T Facciotti, Amy K Schmid, Min Pan, Bruz Marzolf, Phu T Van, Fang‐Yin Lo, Abhishek Pratap, Eric W Deutsch, Amelia Peterson, Dan Martin, Nitin S Baliga
Publikováno v:
Molecular Systems Biology, Vol 5, Iss 1, Pp 1-16 (2009)
Abstract Despite the knowledge of complex prokaryotic‐transcription mechanisms, generalized rules, such as the simplified organization of genes into operons with well‐defined promoters and terminators, have had a significant role in systems analy
Externí odkaz:
https://doaj.org/article/6a75ea0b9e804497884193e6a8bc204b
Autor:
Tomas Persson, Kai Battenberg, Irina V Demina, Theoden Vigil-Stenman, Brian Vanden Heuvel, Petar Pujic, Marc T Facciotti, Elizabeth G Wilbanks, Anna O'Brien, Pascale Fournier, Maria Antonia Cruz Hernandez, Alberto Mendoza Herrera, Claudine Médigue, Philippe Normand, Katharina Pawlowski, Alison M Berry
Publikováno v:
PLoS ONE, Vol 10, Iss 5, p e0127630 (2015)
Frankia strains are nitrogen-fixing soil actinobacteria that can form root symbioses with actinorhizal plants. Phylogenetically, symbiotic frankiae can be divided into three clusters, and this division also corresponds to host specificity groups. The
Externí odkaz:
https://doaj.org/article/a01b5671ba504d8ba7432940ade90572
Autor:
Erin A Becker, Phillip M Seitzer, Andrew Tritt, David Larsen, Megan Krusor, Andrew I Yao, Dongying Wu, Dominique Madern, Jonathan A Eisen, Aaron E Darling, Marc T Facciotti
Publikováno v:
PLoS Genetics, Vol 10, Iss 11, p e1004784 (2014)
Organisms across the tree of life use a variety of mechanisms to respond to stress-inducing fluctuations in osmotic conditions. Cellular response mechanisms and phenotypes associated with osmoadaptation also play important roles in bacterial virulenc
Externí odkaz:
https://doaj.org/article/e9dc9554f3b8489b89cc3f217baa901f
Publikováno v:
PLoS ONE, Vol 8, Iss 7, p e69882 (2013)
In bacteriorhodopsin, the order of molecular events that control the cytoplasmic or extracellular accessibility of the Schiff bases (SB) are not well understood. We use molecular dynamics simulations to study a process involved in the second accessib
Externí odkaz:
https://doaj.org/article/097fd0e9f1f84ca2a1519edb5d057a7b
Publikováno v:
PLoS Computational Biology, Vol 9, Iss 11, p e1003373 (2013)
Nucleosomes, the basic repeat units of eukaryotic chromatin, have been suggested to influence the evolution of eukaryotic genomes, both by altering the propensity of DNA to mutate and by selection acting to maintain or exclude nucleosomes in particul
Externí odkaz:
https://doaj.org/article/5834bf751d7e4caa9109c9a01aa95ca0
Publikováno v:
PLoS ONE, Vol 7, Iss 9, p e42304 (2012)
Remarkable advances in DNA sequencing technology have created a need for de novo genome assembly methods tailored to work with the new sequencing data types. Many such methods have been published in recent years, but assembling raw sequence data to o
Externí odkaz:
https://doaj.org/article/d171c67994c14df3adb5755987004490
Autor:
Erin A Lynch, Morgan G I Langille, Aaron Darling, Elizabeth G Wilbanks, Caitlin Haltiner, Katie S Y Shao, Michael O Starr, Clotilde Teiling, Timothy T Harkins, Robert A Edwards, Jonathan A Eisen, Marc T Facciotti
Publikováno v:
PLoS ONE, Vol 7, Iss 7, p e41389 (2012)
We report the sequencing of seven genomes from two haloarchaeal genera, Haloferax and Haloarcula. Ease of cultivation and the existence of well-developed genetic and biochemical tools for several diverse haloarchaeal species make haloarchaea a model
Externí odkaz:
https://doaj.org/article/dc3fbd12bad04a398d3678030f3740a7
Autor:
Elizabeth G Wilbanks, Marc T Facciotti
Publikováno v:
PLoS ONE, Vol 5, Iss 7, p e11471 (2010)
Next-generation DNA sequencing coupled with chromatin immunoprecipitation (ChIP-seq) is revolutionizing our ability to interrogate whole genome protein-DNA interactions. Identification of protein binding sites from ChIP-seq data has required novel co
Externí odkaz:
https://doaj.org/article/41a342b9d62a4e089492c53aac29ad69
Autor:
Hyunsoo G. Kim, Shay A. Geller, David Karger, Avi Segal, Nicholas Hoernle, Michele M. Igo, Kobi Gal, Kamali Sripathi, Marc T. Facciotti
Publikováno v:
IEEE Transactions on Learning Technologies, vol 14, iss 5
This article provides computational and rule-based approaches for detecting confusion that is expressed in students' comments in couse forums. To obtain reliable, ground truth data about which posts exhibit student confusion, we designed a decision t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72b26a1eadd05f796368f82721802f26
https://doi.org/10.1109/tlt.2021.3123266
https://doi.org/10.1109/tlt.2021.3123266