Výsledky vyhledávání - "Marc A. van Driel"

Akademický článek

ODoSE: a webserver for genome-wide calculation of adaptive divergence in prokaryotes.

Autor: Michiel Vos, Tim A H te Beek, Marc A van Driel, Martijn A Huynen, Adam Eyre-Walker, Mark W J van Passel

Publikováno v: PLoS ONE, Vol 8, Iss 5, p e62447 (2013)

Quantifying patterns of adaptive divergence between taxa is a major goal in the comparative and evolutionary study of prokaryote genomes. When applied appropriately, the McDonald-Kreitman (MK) test is a powerful test of selection based on the relativ

Externí odkaz: https://doaj.org/article/c21dd23906c44252baed88af2bec3f75

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PathoVA

Autor: Marc A. van Driel, Michel A. Westenberg, Alberto Corvo

Publikováno v: 2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017, 77-83
STARTPAGE=77;ENDPAGE=83;TITLE=2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017
VAHC

We introduce PathoVA, a visual analytics system for computer aided pathology diagnosis. The diagnostic work of a pathologist involves characterizing cells and the appearance of histological sections of tissues, which are stained by techniques that hi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c68a3914f4ac646b16a4be0655d48d7
https://research.tue.nl/en/publications/2b6950bc-fa80-493e-ac72-266cd871f7d0

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Impact of soil heat on reassembly of bacterial communities in the rhizosphere microbiome and plant disease suppression

Autor: Marcel Kempenaar, Rodrigo Mendes, Marc A. van Driel, Menno van der Voort, Jos M. Raaijmakers

Publikováno v: Ecology Letters, 19(4), 375-382
Ecology Letters 19 (2016) 4
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Ecology Letters, 19(4), 375-382. Wiley-Blackwell

The rhizosphere microbiome offers a range of ecosystem services to the plant, including nutrient acquisition and tolerance to (a)biotic stress. Here, analysing the data by Mendes et al. (2011), we show that short heat disturbances (50 or 80 °C, 1 h)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a95f67222c464f07c95b703297eac179
https://research.wur.nl/en/publications/impact-of-soil-heat-on-reassembly-of-bacterial-communities-in-the

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Genome-wide pattern of TCF7L2/TCF4 chromatin occupancy in colorectal cancer cells

Autor: Fiona G. G. Nielsen, Rogier Versteeg, Victor Guryev, Evan E. Santo, Edwin Cuppen, Jan Koster, Marc A. van Driel, Isaac J. Nijman, Marc van de Wetering, Pantelis Hatzis, Laurens G. van der Flier, Hendrik G. Stunnenberg, Hans Clevers, Sergei Denissov, Willem Welboren

Publikováno v: Molecular and Cellular Biology, 28, 2732-2744
Molecular and Cellular Biology, 28, 8, pp. 2732-2744
Molecular and Cellular Biology, 28(8), 2732-2744. American Society for Microbiology
Molecular and cellular biology, 28(8), 2732-2744. American Society for Microbiology

Wnt signaling activates gene expression through the induced formation of complexes between DNA-binding T-cell factors (TCFs) and the transcriptional coactivator beta-catenin. In colorectal cancer, activating Wnt pathway mutations transform epithelial

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::953f1eb0b77dab3eded7f3a9f190af33
https://hdl.handle.net/2066/70150

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Identification of novel functional TBP-binding sites and general factor repertoires

Autor: Tim Hulsen, Ingrid Grummt, Renate Voit, Ron Wehrens, Sergey Denissov, Hendrik G. Stunnenberg, Nouria Hernandez, Maarten L. Hekkelman, Marc A. van Driel

Publikováno v: EMBO Journal, 26, 944-54
EMBO Journal, 26, 4, pp. 944-54

Item does not contain fulltext Our current knowledge of the general factor requirement in transcription by the three mammalian RNA polymerases is based on a small number of model promoters. Here, we present a comprehensive chromatin immunoprecipitati

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f795edbfcccefe7e0d21ccd458a0fd0
https://hdl.handle.net/2066/34648

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Modulating crossover positioning by introducing large structural changes in chromosomes

Autor: Janny L. Peters, Tom Gerats, Antoine G. H. Ederveen, Marc A. van Driel, Yuching Lai

Publikováno v: BMC Genomics, 16, 2015
BMC Genomics, 16, 1-12
BMC Genomics, 16, pp. 1-12
BMC Genomics

Background Crossing over assures the correct segregation of the homologous chromosomes to both poles of the dividing meiocyte. This exchange of DNA creates new allelic combinations thus increasing the genetic variation present in offspring. Crossover

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9c9f3c49f88d37b63d59bb27781c3267
http://resolver.tudelft.nl/uuid:345c49c8-dc88-443d-969f-aef8ca715a81

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iAnn: an event sharing platform for the life sciences

Publikováno v: Bioinformatics; Vol 29
Bioinformatics, 29, 1919-1921
Bioinformatics, 29, 15, pp. 1919-1921
Europe PubMed Central
Bioinformatics

Summary: We present iAnn, an open source community-driven platform for dissemination of life science events, such as courses, conferences and workshops. iAnn allows automatic visualisation and integration of customised event reports. A central reposi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::79aec86e034ec92adec5c49aa26a527c

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Novel types of mutation in the choroideremia ( CHM) gene: a full-length L1 insertion and an intronic mutation activating a cryptic exon

Autor: L. Ingeborgh van den Born, Bernd Wissinger, Marc A. van Driel, Eberhart Zrenner, Han G. Brunner, Lies H. Hoefsloot, Hans-Hilger Ropers, John R. Heckenlively, Ilse J. de Wijs, Frans P.M. Cremers, José A. J. M. van den Hurk, Dorien J. R. van de Pol

Publikováno v: Human Genetics, 113, 3, pp. 268-75
Human Genetics, 113, 268-75

Contains fulltext : 120677.pdf (Publisher’s version ) (Closed access) Choroideremia (CHM) is a progressive chorioretinal degeneration caused by mutations in the widely expressed CHM gene on chromosome Xq21. The product of this gene, Rab escort prot

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d790c218ae8911b3fc49f1c8f07c13c4
https://hdl.handle.net/2066/120677

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MetIDB: A Publicly Accessible Database of Predicted and Experimental 1H NMR Spectra of Flavonoids

Autor: Reino Laatikainen, Matthias Niemitz, Marc A. van Driel, Frank van Zimmeren, Samuli-Petrus Korhonen, Velitchka V. Mihaleva, Tim A. H. te Beek, Sofia Moco, Jacques Vervoort

Publikováno v: Analytical Chemistry, 85(18), 8700-8707
Analytical Chemistry 85 (2013) 18

Identification of natural compounds, especially secondary metabolites, has been hampered by the lack of easy to use and accessible reference databases. Nuclear magnetic resonance (NMR) spectroscopy is the most selective technique for identification o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9d35176d758ff72b760d6db3f3895642
https://research.wur.nl/en/publications/metidb-a-publicly-accessible-database-of-predicted-and-experiment

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MetiTree: A web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data

Autor: Thomas Hankemeier, Michael van Vliet, Miguel Rojas-Chertó, Theo H. Reijmers, Ronnie van Doorn, Maarten Kooyman, Tim A. H. te Beek, Julio E. Peironcely, Marc A. van Driel

Publikováno v: Europe PubMed Central
Bioinformatics, 20, 28, 2707-2709
Bioinformatics

Summary: Identification of metabolites using high-resolution multi-stage mass spectrometry (MSn) data is a significant challenge demanding access to all sorts of computational infrastructures. MetiTree is a user-friendly, web application dedicated to

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eac438e668cda82a257290dc4b7efc8e
http://resolver.tudelft.nl/uuid:90cdbdc2-c2ef-4fb9-a6a4-b043e7dd9bc7

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