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of 287
pro vyhledávání: '"Marashi Sayed-Amir"'
Publikováno v:
Algorithms for Molecular Biology, Vol 7, Iss 1, p 17 (2012)
Abstract Background Analysis of elementary modes (EMs) is proven to be a powerful constraint-based method in the study of metabolic networks. However, enumeration of EMs is a hard computational task. Additionally, due to their large number, EMs canno
Externí odkaz:
https://doaj.org/article/de8f7ad6d62b4ffda39347b90554fa72
Publikováno v:
BMC Bioinformatics, Vol 12, Iss 1, p 236 (2011)
Abstract Background Flux coupling analysis (FCA) is a useful method for finding dependencies between fluxes of a metabolic network at steady-state. FCA classifies reactions into subsets (called coupled reaction sets) in which activity of one reaction
Externí odkaz:
https://doaj.org/article/e65375dd486e425daaca4e3528507445
Publikováno v:
BMC Bioinformatics, Vol 9, Iss 1, p 357 (2008)
Abstract Background The problem of accurate prediction of protein secondary structure continues to be one of the challenging problems in Bioinformatics. It has been previously suggested that amino acid relative solvent accessibility (RSA) might be an
Externí odkaz:
https://doaj.org/article/cebf11cc96b84785a0e2a49a0dae1d9d
Autor:
Pezeshk Hamid, Sadeghi Mehdi, Arab Shahriar, Katanforoush Ali, Kargar Mehdi, Sheari Armita, Eslahchi Changiz, Marashi Sayed-Amir
Publikováno v:
BMC Bioinformatics, Vol 9, Iss 1, p 274 (2008)
Abstract Background It has been previously shown that palindromic sequences are frequently observed in proteins. However, our knowledge about their evolutionary origin and their possible importance is incomplete. Results In this work, we tried to rev
Externí odkaz:
https://doaj.org/article/3d48a37a60584680955e37532e011c00
Publikováno v:
BMC Bioinformatics, Vol 7, Iss 1, p 297 (2006)
Abstract Background gene identification in genomic DNA sequences by computational methods has become an important task in bioinformatics and computational gene prediction tools are now essential components of every genome sequencing project. Predicti
Externí odkaz:
https://doaj.org/article/948403fb20094e4e8f4bd7d2d2738b80
Akademický článek
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Publikováno v:
Computational Biology and Chemistry, Available online 24 June 2020
In this paper, a system architecture is proposed that approximately models the functionality of metabolic networks. The AND/OR graph model is used to represent the metabolic network and each processing element in the system emulates the functionality
Externí odkaz:
http://arxiv.org/abs/1804.02867
Publikováno v:
BioSystems,165,40--51,(2018)
An Elementary Flux Mode (EFM) is a pathway with minimum set of reactions that are functional in steady-state constrained space. Due to the high computational complexity of calculating EFMs, different approaches have been proposed to find these flux-b
Externí odkaz:
http://arxiv.org/abs/1703.06496
Publikováno v:
In Biochemical Engineering Journal February 2022 179
Autor:
Zangene, Ehsan1 (AUTHOR), Marashi, Sayed-Amir2 (AUTHOR) marashi@ut.ac.ir, Montazeri, Hesam1 (AUTHOR) hesam.montazeri@ut.ac.ir
Publikováno v:
Scientific Reports. 9/22/2023, Vol. 13 Issue 1, p1-13. 13p.