Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Manupriyam Dubey"'
Autor:
Senka Čaušević, Manupriyam Dubey, Marian Morales, Guillem Salazar, Vladimir Sentchilo, Nicolas Carraro, Hans-Joachim Ruscheweyh, Shinichi Sunagawa, Jan Roelof van der Meer
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-19 (2024)
Abstract Microbiome engineering – the targeted manipulation of microbial communities – is considered a promising strategy to restore ecosystems, but experimental support and mechanistic understanding are required. Here, we show that bacterial ino
Externí odkaz:
https://doaj.org/article/5d5b3b751e2a4b949084bad1c41468fb
Autor:
Isaline Guex, Christian Mazza, Manupriyam Dubey, Maxime Batsch, Renyi Li, Jan Roelof van der Meer
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 8, p e1011402 (2023)
When bacterial species with the same resource preferences share the same growth environment, it is commonly believed that direct competition will arise. A large variety of competition and more general 'interaction' models have been formulated, but wh
Externí odkaz:
https://doaj.org/article/8b9e24867bd544928fde76e8c34ffb52
Autor:
Manupriyam Dubey, Noushin Hadadi, Serge Pelet, Nicolas Carraro, David R. Johnson, Jan R. van der Meer
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-15 (2021)
Manupriyam Dubey et al. use experimental systems with naturally derived soil microbiomes in liquid suspensions and encapsulated beads to compare community dynamics in well-connected and poorly connected environments. While their results show that mic
Externí odkaz:
https://doaj.org/article/9ffadeb4c93441388479d6403e5051d0
Autor:
Artur Reimer, Vitali Maffenbeier, Manupriyam Dubey, Vladimir Sentchilo, Diogo Tavares, Manuel Hernandez Gil, Siham Beggah, Jan Roelof van der Meer
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-11 (2017)
Abstract The Escherichia coli RbsB ribose binding protein has been used as a scaffold for predicting new ligand binding functions through in silico modeling, yet with limited success and reproducibility. In order to possibly improve the success of pr
Externí odkaz:
https://doaj.org/article/0b1e4619ab914a33b84f04afc5cf2d7e
Autor:
Marian Morales, Vladimir Sentchilo, Claire Bertelli, Andrea Komljenovic, Nadezda Kryuchkova-Mostacci, Audrey Bourdilloud, Burkhard Linke, Alexander Goesmann, Keith Harshman, Francisca Segers, Fabien Delapierre, Damien Fiorucci, Mathieu Seppey, Evgeniya Trofimenco, Pauline Berra, Athimed El Taher, Chloé Loiseau, Dejan Roggero, Madeleine Sulfiotti, Angela Etienne, Gustavo Ruiz Buendia, Loïc Pillard, Angelique Escoriza, Roxane Moritz, Cedric Schneider, Esteban Alfonso, Fatma Ben Jeddou, Oliver Selmoni, Gregory Resch, Gilbert Greub, Olivier Emery, Manupriyam Dubey, Trestan Pillonel, Marc Robinson-Rechavi, Jan Roelof van der Meer
Publikováno v:
PLoS ONE, Vol 11, Iss 11, p e0165850 (2016)
The natural restoration of soils polluted by aromatic hydrocarbons such as benzene, toluene, ethylbenzene and m- and p-xylene (BTEX) may be accelerated by inoculation of specific biodegraders (bioaugmentation). Bioaugmentation mainly involves introdu
Externí odkaz:
https://doaj.org/article/28020bdb2be14e7c8e41d4fcfed3cdbd
Autor:
Noushin Hadadi, Jan Roelof van der Meer, Serge Pelet, David R. Johnson, Manupriyam Dubey, Nicolas Carraro
Publikováno v:
Communications biology, vol. 4, no. 1, pp. 492
Communications Biology
Communications Biology, Vol 4, Iss 1, Pp 1-15 (2021)
Communications Biology
Communications Biology, Vol 4, Iss 1, Pp 1-15 (2021)
Interspecific interactions are thought to govern the stability and functioning of microbial communities, but the influence of the spatial environment and its structural connectivity on the potential of such interactions to unfold remain largely unkno
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ece8dd704419649a9551824b03de740e
https://serval.unil.ch/resource/serval:BIB_D2457E5CE56F.P001/REF.pdf
https://serval.unil.ch/resource/serval:BIB_D2457E5CE56F.P001/REF.pdf
Publikováno v:
Journal of Virological Methods. 296:114225
Enterovirus (EV) infectivity is typically measured as a bulk parameter, yet EV serotypes vary in their susceptibility to natural and engineered stressors. Here we developed an integrated cell culture reverse transcriptase quantitative PCR (ICC-RTqPCR
Autor:
Siham Beggah, Manuel Hernandez Gil, Vitali Maffenbeier, Artur Reimer, Manupriyam Dubey, Vladimir Sentchilo, Diogo Tavares, Jan Roelof van der Meer
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-11 (2017)
Scientific reports, vol. 7, no. 1, pp. 8245
Scientific Reports
Scientific reports, vol. 7, no. 1, pp. 8245
Scientific Reports
The Escherichia coli RbsB ribose binding protein has been used as a scaffold for predicting new ligand binding functions through in silico modeling, yet with limited success and reproducibility. In order to possibly improve the success of predictive
Species interactions at the cellular level are thought to govern the formation and functioning of microbial communities, but direct measurements of species interactions are difficult to perform between the hundreds of different species that constitut
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::200b24fba0b66a6c77a1497c0620f6f6
Autor:
Dejan Roggero, Mathieu Seppey, Damien Fiorucci, Claire Bertelli, Gustavo A. Ruiz Buendía, Cedric Schneider, Chloé Loiseau, Jan Roelof van der Meer, Oliver M. Selmoni, Alexander Goesmann, Andrea Komljenovic, Olivier Emery, Esteban Alfonso, Gilbert Greub, Angelique Escoriza, Burkhard Linke, Pauline Berra, Fatma Ben Jeddou, Keith Harshman, Marc Robinson-Rechavi, Loïc Pillard, Angela Etienne, Evgeniya Trofimenco, Fabien Delapierre, Manupriyam Dubey, Francisca H. I. D. Segers, Athimed El Taher, Madeleine Sulfiotti, Vladimir Sentchilo, Marian Morales, Grégory Resch, Trestan Pillonel, Nadezda Kryuchkova-Mostacci, Roxane Moritz, Audrey Bourdilloud
Publikováno v:
PLoS ONE
PloS one, vol. 11, no. 11, pp. e0165850
PLoS ONE, Vol 11, Iss 11, p e0165850 (2016)
PLoS One, vol. 11, no. 11, pp. e0165850
PloS one, vol. 11, no. 11, pp. e0165850
PLoS ONE, Vol 11, Iss 11, p e0165850 (2016)
PLoS One, vol. 11, no. 11, pp. e0165850
The natural restoration of soils polluted by aromatic hydrocarbons such as benzene, toluene, ethylbenzene and m- and p-xylene (BTEX) may be accelerated by inoculation of specific biodegraders (bioaugmentation). Bioaugmentation mainly involves introdu