A chromosome-scale assembly reveals chromosomal aberrations and exchanges generating genetic diversity in Coffea arabica germplasm

Autor: Simone Scalabrin, Gabriele Magris, Mario Liva, Nicola Vitulo, Michele Vidotto, Davide Scaglione, Lorenzo Del Terra, Manuela Rosanna Ruosi, Luciano Navarini, Gloria Pellegrino, Jorge Carlos Berny Mier y Teran, Lucile Toniutti, Furio Suggi Liverani, Mario Cerutti, Gabriele Di Gaspero, Michele Morgante

Publikováno v: Nature Communications, Vol 15, Iss 1, Pp 1-15 (2024)

Abstract In order to better understand the mechanisms generating genetic diversity in the recent allotetraploid species Coffea arabica, here we present a chromosome-level assembly obtained with long read technology. Two genomic compartments with diff

Externí odkaz: https://doaj.org/article/449944f0fc0a47b1b90037d1f13f371e

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm

Autor: Sara Pinosio, Gloria Pellegrino, Lucile Toniutti, Gabriele Magris, Timothy Schilling, Gabriele Di Gaspero, Benoît Bertrand, Seth C. Murray, Simone Scalabrin, Davide Scaglione, Amin Al Hakimi, Irena Jurman, Giorgio Graziosi, Nicola Vitulo, Giorgio Valle, Frederica Cattonaro, Michele Morgante, Manuela Rosanna Ruosi, Patricia E. Klein, Mario Cerutti, Luciano Navarini, Alberto Pallavicini, Lorenzo Del Terra, Furio Suggi Liverani, Nolan Bentley, Michele Vidotto, Christophe Montagnon, Federica Magni, William Solano

Publikováno v: Scientific Reports
Scientific Reports, Vol 10, Iss 1, Pp 1-13 (2020)
Scientific reports (Nature Publishing Group) 10 (2020). doi:10.1038/s41598-020-61216-7
info:cnr-pdr/source/autori:Scalabrin S.; Toniutti L.; Di Gaspero G.; Scaglione D.; Magris G.; Vidotto M.; Pinosio S.; Cattonaro F.; Magni F.; Jurman I.; Cerutti M.; Suggi Liverani F.; Navarini L.; Del Terra L.; Pellegrino G.; Ruosi M.R.; Vitulo N.; Valle G.; Pallavicini A.; Graziosi G.; Klein P.E.; Bentley N.; Murray S.; Solano W.; Al Hakimi A.; Schilling T.; Montagnon C.; Morgante M.; Bertrand B./titolo:A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm/doi:10.1038%2Fs41598-020-61216-7/rivista:Scientific reports (Nature Publishing Group)/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume:10

The genome of the allotetraploid species Coffea arabica L. was sequenced to assemble independently the two component subgenomes (putatively deriving from C. canephora and C. eugenioides) and to perform a genome-wide analysis of the genetic diversity

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9835663dadfdbe516f296b20657a4456
http://hdl.handle.net/11368/2960782

Chemometric Modeling of Coffee Sensory Notes through Their Chemical Signatures: Potential and Limits in Defining an Analytical Tool for Quality Control

Autor: Carlo Bicchi, Patrizia Rubiolo, Davide Bressanello, Erica Liberto, Manuela Rosanna Ruosi, Chiara Cordero, Barbara Sgorbini, Gloria Pellegrino

Publikováno v: Journal of Agricultural and Food Chemistry. 66:7096-7109

Aroma is a primary hedonic aspect of a good coffee. Coffee aroma quality is generally defined by cup tasting, which however is time-consuming in terms of panel training and alignment and too subjective. It is challenging to define a relationship betw

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::194c06343bbb987aadb5d29bc164ff36
https://doi.org/10.1021/acs.jafc.8b01340

New medium-to-high polarity twister coatings for liquid and vapour phase sorptive extraction of matrices of vegetable origin

Autor: Erica Liberto, Cecilia Cagliero, Carlo Bicchi, Barbara Sgorbini, Chiara Cordero, Patrizia Rubiolo, Manuela Rosanna Ruosi

Publikováno v: Journal of Chromatography A. 1265:39-45

Stir Bar Sorptive Extraction (SBSE) is a solventless sampling technique first introduced to extract organic analytes from aqueous samples, in the following applied to headspace sampling (HeadSpace Sorptive Extraction – HSSE). In SBSE and HSSE, anal

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c01be4e08d44c4e9ed1423c356385262
https://doi.org/10.1016/j.chroma.2012.09.097

Quantitative determination of some volatile suspected allergens in cosmetic creams spread on skin by direct contact sorptive tape extraction–gas chromatography–mass spectrometry

Autor: Barbara Sgorbini, Patrizia Rubiolo, Carlo Bicchi, Erica Liberto, Manuela Rosanna Ruosi, Chiara Cordero

Publikováno v: Journal of Chromatography A. 1217:2599-2605

This study describes a method based on direct contact sorptive tape extraction followed by on-line thermal desorption gas chromatography-mass spectrometry (DC-STE-GC-MS) to detect and quantify a group of suspected volatile allergens on the European U

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5cc960511dc79968cf18f8cd03f8d5a2
https://doi.org/10.1016/j.chroma.2009.12.052