Zobrazeno 1 - 10
of 43
pro vyhledávání: '"Mansi Chovatia"'
Autor:
Nastasia J. Freyria, Thais C. de Oliveira, Mansi Chovatia, Jennifer Johnson, Alan Kuo, Anna Lipzen, Kerrie W. Barry, Igor V. Grigoriev, Connie Lovejoy
Publikováno v:
Communications Biology, Vol 7, Iss 1, Pp 1-14 (2024)
Abstract Marine microbes that have for eons been adapted to stable salinity regimes are confronted with sudden decreases in salinity in the Arctic Ocean. The episodic freshening is increasing due to climate change with melting multi-year sea-ice and
Externí odkaz:
https://doaj.org/article/04ca908760cf434094ae1b91aaa3c4a0
Autor:
Harrison Ho, Mansi Chovatia, Rob Egan, Guifen He, Yuko Yoshinaga, Ivan Liachko, Ronan O’Malley, Zhong Wang
Publikováno v:
PeerJ, Vol 11, p e16129 (2023)
Metagenome binning is a key step, downstream of metagenome assembly, to group scaffolds by their genome of origin. Although accurate binning has been achieved on datasets containing multiple samples from the same community, the completeness of binnin
Externí odkaz:
https://doaj.org/article/36d5049cd7454e70a7ce3f40dfb42fdd
Autor:
Nastasia J. Freyria, Alan Kuo, Mansi Chovatia, Jenifer Johnson, Anna Lipzen, Kerrie W. Barry, Igor V. Grigoriev, Connie Lovejoy
Publikováno v:
Communications Biology, Vol 5, Iss 1, Pp 1-13 (2022)
Arctic microalgae show specific adaptation to cold saline arctic conditions with differential expression of several antifreeze proteins, an ice-binding protein and an acyl-esterase involved in cold adaptation.
Externí odkaz:
https://doaj.org/article/5461976f68a94e43ba1cefa145dc65b3
Autor:
Ying Chang, D’Ann Rochon, Satoshi Sekimoto, Yan Wang, Mansi Chovatia, Laura Sandor, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)
Abstract The zoosporic obligate endoparasites, Olpidium, hold a pivotal position to the reconstruction of the flagellum loss in fungi, one of the key morphological transitions associated with the colonization of land by the early fungi. We generated
Externí odkaz:
https://doaj.org/article/43da8aae83df4773810b0787d298573f
Autor:
Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K. Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia R. Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon K. Magnuson, Bernard Henrissat, Uffe H. Mortensen, Thomas O. Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott E. Baker, Mikael R. Andersen
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Aspergillus fungi classified within the section Flavi include harmful and beneficial species. Here, Kjærbølling et al. analyse the genomes of 23 Flavi species, showing high genetic diversity and potential for synthesis of over 13,700 CAZymes and 16
Externí odkaz:
https://doaj.org/article/bdaa7f283fe143698df14e2b5d6b20fc
Autor:
Setsuko Wakao, Patrick M Shih, Katharine Guan, Wendy Schackwitz, Joshua Ye, Dhruv Patel, Robert M Shih, Rachel M Dent, Mansi Chovatia, Aditi Sharma, Joel Martin, Chia-Lin Wei, Krishna K Niyogi
Publikováno v:
PLoS Genetics, Vol 17, Iss 9, p e1009725 (2021)
Large-scale mutant libraries have been indispensable for genetic studies, and the development of next-generation genome sequencing technologies has greatly advanced efforts to analyze mutants. In this work, we sequenced the genomes of 660 Chlamydomon
Externí odkaz:
https://doaj.org/article/59d15a396265411ab7cb8cd094b796d1
Autor:
Ander Peña, Rashid Babiker, Delphine Chaduli, Anna Lipzen, Mei Wang, Mansi Chovatia, Jorge Rencoret, Gisela Marques, María Isabel Sánchez-Ruiz, Teeratas Kijpornyongpan, Davinia Salvachúa, Susana Camarero, Vivian Ng, Ana Gutiérrez, Igor V. Grigoriev, Marie-Noëlle Rosso, Angel T. Martínez, Francisco J. Ruiz-Dueñas
Publikováno v:
Journal of Fungi, Vol 7, Iss 6, p 426 (2021)
Pleurotus eryngii is a grassland-inhabiting fungus of biotechnological interest due to its ability to colonize non-woody lignocellulosic material. Genomic, transcriptomic, exoproteomic, and metabolomic analyses were combined to explain the enzymatic
Externí odkaz:
https://doaj.org/article/54feecaf9dce416fbe19865932c89dee
Autor:
Erin A Gontang, Frank O Aylward, Camila Carlos, Tijana Glavina Del Rio, Mansi Chovatia, Alison Fern, Chien-Chi Lo, Stephanie A Malfatti, Susannah G Tringe, Cameron R Currie, Roberto Kolter
Publikováno v:
PLoS ONE, Vol 12, Iss 5, p e0177189 (2017)
Investigations of gut microbiomes have shed light on the diversity and genetic content of these communities, and helped shape our understanding of how host-associated microorganisms influence host physiology, behavior, and health. Despite the importa
Externí odkaz:
https://doaj.org/article/dda598527d0e4d60afdba951f219f992
Autor:
Jay W Kim, Susan H Brawley, Simon Prochnik, Mansi Chovatia, Jane Grimwood, Jerry Jenkins, Kurt LaButti, Konstantinos Mavromatis, Matt Nolan, Matthew Zane, Jeremy Schmutz, John W Stiller, Arthur R Grossman
Publikováno v:
PLoS ONE, Vol 11, Iss 3, p e0151883 (2016)
Porphyra is a macrophytic red alga of the Bangiales that is important ecologically and economically. We describe the genomes of three bacteria in the phylum Planctomycetes (designated P1, P2 and P3) that were isolated from blades of Porphyra umbilica
Externí odkaz:
https://doaj.org/article/19af51fc653f40eaa3b0177908bb6717
Autor:
Robert Kourist, Felix Bracharz, Jan Lorenzen, Octavia N. Kracht, Mansi Chovatia, Chris Daum, Shweta Deshpande, Anna Lipzen, Matt Nolan, Robin A. Ohm, Igor V. Grigoriev, Sheng Sun, Joseph Heitman, Thomas Brück, Minou Nowrousian
Publikováno v:
mBio, Vol 6, Iss 4 (2015)
ABSTRACT Microbial fermentation of agro-industrial waste holds great potential for reducing the environmental impact associated with the production of lipids for industrial purposes from plant biomass. However, the chemical complexity of many residue
Externí odkaz:
https://doaj.org/article/8e3fa0c4a19d41e4a4afed012ac8bb37