Zobrazeno 1 - 10
of 359
pro vyhledávání: '"Mangul Serghei"'
Autor:
Huang, Yu-Ning, Love, Michael I., Ronkowski, Cynthia Flaire, Deshpande, Dhrithi, Schriml, Lynn M., Wong-Beringer, Annie, Mons, Barend, Corbett-Detig, Russell, Hunter, Christopher I, Moore, Jason H., Garmire, Lana X., Reddy, T. B. K., Hide, Winston A., Butte, Atul J., Robinson, Mark D., Mangul, Serghei
Metadata, often termed "data about data," is crucial for organizing, understanding, and managing vast omics datasets. It aids in efficient data discovery, integration, and interpretation, enabling users to access, comprehend, and utilize data effecti
Externí odkaz:
http://arxiv.org/abs/2401.02965
Autor:
Gollwitzer, Arvid E., Alser, Mohammed, Bergtholdt, Joel, Lindegger, Joel, Rumpf, Maximilian-David, Firtina, Can, Mangul, Serghei, Mutlu, Onur
Metagenomics, the study of genome sequences of diverse organisms cohabiting in a shared environment, has experienced significant advancements across various medical and biological fields. Metagenomic analysis is crucial, for instance, in clinical app
Externí odkaz:
http://arxiv.org/abs/2311.02029
Autor:
Rumpf, Maximilian-David, Alser, Mohammed, Gollwitzer, Arvid E., Lindegger, Joel, Almadhoun, Nour, Firtina, Can, Mangul, Serghei, Mutlu, Onur
Computational complexity is a key limitation of genomic analyses. Thus, over the last 30 years, researchers have proposed numerous fast heuristic methods that provide computational relief. Comparing genomic sequences is one of the most fundamental co
Externí odkaz:
http://arxiv.org/abs/2310.16908
Autor:
Munteanu, Viorel, Gordeev, Victor, Saldana, Michael, Aßmann, Eva, Su, Justin Maine, Drabcinski, Nicolae, Zlenko, Oksana, Kit, Maryna, Iordachi, Felicia, Patel, Khooshbu Kantibhai, Nahid, Abdullah Al, Chittampalli, Likhitha, Xu, Yidian, Skums, Pavel, Agrawal, Shelesh, Hölzer, Martin, Smith, Adam, Zelikovsky, Alex, Mangul, Serghei
In light of the continuous transmission and evolution of SARS-CoV-2 coupled with a significant decline in clinical testing, there is a pressing need for scalable, cost-effective, long-term, passive surveillance tools to effectively monitor viral vari
Externí odkaz:
http://arxiv.org/abs/2309.16994
Autor:
Munteanu, Viorel, Saldana, Michael, Ciorba, Dumitru, Bostan, Viorel, Su, Justin Maine, Kasianchuk, Nadiia, Sharma, Nitesh Kumar, Knyazev, Sergey, Gordeev, Victor, Aßmann, Eva, Lobiuc, Andrei, Covasa, Mihai, Crandall, Keith A., Ouyang, Wenhao O., Wu, Nicholas C., Mason, Christopher, Tierney, Braden T, Lucaci, Alexander G, Zelikovsky, Alex, Mohebbi, Fatemeh, Skums, Pavel, Gibas, Cynthia, Schlueter, Jessica, Rzymski, Piotr, Solo-Gabriele, Helena, Hölzer, Martin, Smith, Adam, Mangul, Serghei
During the SARS-CoV-2 pandemic, wastewater-based genomic surveillance (WWGS) emerged as an efficient viral surveillance tool that takes into account asymptomatic cases and can identify known and novel mutations and offers the opportunity to assign kn
Externí odkaz:
http://arxiv.org/abs/2309.13326
Autor:
Baykal, Pelin Icer, Łabaj, Paweł P., Markowetz, Florian, Schriml, Lynn M., Stekhoven, Daniel J., Mangul, Serghei, Beerenwinkel, Niko
In biomedical research, validation of a new scientific discovery is tied to the reproducibility of its experimental results. However, in genomics, the definition and implementation of reproducibility still remain imprecise. Here, we argue that genomi
Externí odkaz:
http://arxiv.org/abs/2308.09558
Autor:
Alser, Mohammed, Waymost, Sharon, Ayyala, Ram, Lawlor, Brendan, Abdill, Richard J., Rajkumar, Neha, LaPierre, Nathan, Brito, Jaqueline, Ribeiro-dos-Santos, Andre M., Firtina, Can, Almadhoun, Nour, Sarwal, Varuni, Eskin, Eleazar, Hu, Qiyang, Strong, Derek, Byoung-Do, Kim, Abedalthagafi, Malak S., Mutlu, Onur, Mangul, Serghei
Omics software tools have reshaped the landscape of modern biology and become an essential component of biomedical research. The increasing dependence of biomedical scientists on these powerful tools creates a need for easier installation and greater
Externí odkaz:
http://arxiv.org/abs/2203.16261
Publikováno v:
BMC Bioinformatics, Vol 13, Iss Suppl 18, p A11 (2012)
Externí odkaz:
https://doaj.org/article/9a5abeac2a25403583d8e90bb8eed3b8
Autor:
Măndoiu Ion, Westbrooks Kelly, Mangul Serghei, Tork Bassam, Astrovskaya Irina, Balfe Peter, Zelikovsky Alex
Publikováno v:
BMC Bioinformatics, Vol 12, Iss Suppl 6, p S1 (2011)
Abstract Background RNA viruses infecting a host usually exist as a set of closely related sequences, referred to as quasispecies. The genomic diversity of viral quasispecies is a subject of great interest, particularly for chronic infections, since
Externí odkaz:
https://doaj.org/article/73300a0e2519477992e2442316bf8e00