SARS-CoV-2 Selectively Induces the Expression of Unproductive Splicing Isoforms of Interferon, Class I MHC, and Splicing Machinery Genes.

Autor: Dias, Thomaz Lüscher^1,2 (AUTHOR) icaromscastro@gmail.com, Mamede, Izabela¹ (AUTHOR) iza.mamede@gmail.com, de Toledo, Nayara Evelin¹ (AUTHOR) nayaraevelin2@gmail.com, Queiroz, Lúcio Rezende¹ (AUTHOR) luciorqueiroz@gmail.com, Castro, Ícaro² (AUTHOR), Polidoro, Rafael³ (AUTHOR) rapoli@iu.edu, Del-Bem, Luiz Eduardo^4,5 (AUTHOR) lev.del.bem@gmail.com, Nakaya, Helder^2,6,7 (AUTHOR) hnakaya@usp.br, Franco, Glória Regina¹ (AUTHOR) hnakaya@usp.br

Publikováno v: International Journal of Molecular Sciences. Jun2024, Vol. 25 Issue 11, p5671. 17p.

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miRNAs in cerebrospinal fluid associated with Alzheimer's disease: A systematic review and pathway analysis using a data mining and machine learning approach.

Autor: Pereira, Jessica Diniz, Teixeira, Lívia Cristina Ribeiro, Mamede, Izabela, Alves, Michelle Teodoro, Caramelli, Paulo, Luizon, Marcelo Rizzatti, Veloso, Adriano Alonso, Gomes, Karina Braga

Publikováno v: Journal of Neurochemistry; Jun2024, Vol. 168 Issue 6, p977-994, 18p

Gut bacteria-derived succinate induces enteric nervous system regeneration.

Autor: Aydin B, Mamede I, Cardoso J, Deere J, Alvarez Y, Qiao S, Sharma VP, Scavuzzo MA, Donaldson GP, Guo CJ, Mucida D

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 18. Date of Electronic Publication: 2024 Oct 18.

The tidyomics ecosystem: Enhancing omic data analyses.

Autor: Hutchison WJ; Walter and Eliza Hall Institute of Medical Research, Division of Bioinformatics, Parkville, VIC 3052, Australia.; Department of Medical Biology, University of Melbourne, Parkville, VIC 3052, Australia., Keyes TJ; Stanford University School of Medicine, Department of Biomedical Data Science, USA.; Stanford University School of Medicine, Department of Pediatrics, USA., Crowell HL; University of Zurich, Switzerland.; Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain., Serizay J; Institut Pasteur, CNRS UMR3525, Unité Régulation Spatiale des Génomes, F-75015, Paris, France., Soneson C; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Davis ES; Bioinformatics and Computational Biology Program, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA., Sato N; Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Japan., Moses L; California Institute of Technology, USA., Tarlinton B; Queensland Department of Agriculture and Fisheries, Australia., Nahid AA; Department of Biochemistry and Molecular Biology, Shahjalal University of Science and Technology, Sylhet, Bangladesh., Kosmac M; Achilles Therapeutics, UK., Clayssen Q; DNA Script, France., Yuan V; Department of Statistics, The University of British Columbia, Canada., Mu W; Biostatistics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA., Park JE; Biostatistics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA., Mamede I; Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil., Ryu MH; Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, USA.; Department of Medicine, Harvard Medical School, USA., Axisa PP; Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Centre de Recherches en Cancérologie de Toulouse, Toulouse, France., Paiz P; Stanford University School of Medicine, Department of Biomedical Data Science, USA., Poon CL; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Tang M; Immunitas Therapeutics, USA., Gottardo R; University of Lausanne, Switzerland.; Lausanne University Hospital.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Morgan M; Roswell Park Comprehensive Cancer Center, USA., Lee S; Genentech, Department of Bioinformatics and Computational Biology, USA., Lawrence M; Genentech, Department of Bioinformatics and Computational Biology, USA., Hicks SC; Department of Biostatistics, Johns Hopkins University, USA.; Department of Biomedical Engineering, Johns Hopkins University, USA.; Malone Center for Engineering in Healthcare, Johns Hopkins University, MD, USA., Nolan GP; Stanford University School of Medicine, Department of Pathology, USA., Davis KL; Stanford University School of Medicine, Department of Pediatrics, USA., Papenfuss AT; Walter and Eliza Hall Institute of Medical Research, Division of Bioinformatics, Parkville, VIC 3052, Australia.; Department of Medical Biology, University of Melbourne, Parkville, VIC 3052, Australia., Love MI; Genetics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA.; Biostatistics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA., Mangiola S; Walter and Eliza Hall Institute of Medical Research, Division of Bioinformatics, Parkville, VIC 3052, Australia.; Department of Medical Biology, University of Melbourne, Parkville, VIC 3052, Australia.; The University of Adelaide, South Australian immunoGENomics Cancer Institute, Adelaide, South Australia, Australia.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 May 22. Date of Electronic Publication: 2024 May 22.