Genomic Analysis of Drosophila Chromosome Underreplication Reveals a Link between Replication Control and Transcriptional Territories

Autor: Belyakin, Stepan N., Christophides, George K., Alekseyenko, Artyom A., Kriventseva, Evgenia V., Belyaeva, Elena S., Nanayev, Roman A., Makunin, Igor V., Kafatos, Fotis C., Zhimulev, Igor F.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2005 Jun 01. 102(23), 8269-8274.

Externí odkaz: https://www.jstor.org/stable/3375828

Robust public computational services supporting Genome Assembly and Annotation for Australian researchers

Autor: Nelson, Tiffanie M., Christiansen, Jeffrey H., Al Bkhetan, Ziad, Bassetti, Madeline, Bromhead, Catherine, Burke, Melissa, Connolly, Keeva, Gustafsson, O. Johan R., Graham, Gavin, Gray, Mark, Gorse, Dominique, Hall, Christina, Hall, Kathryn, Hyde, Cameron, Khan, Farah Z., Lee, Justin, Manos, Steven, Makunin, Igor, Mok, Winnie, Phippard, Lisa, Price, Gareth, Stott, Audrey, Thang, Mike W. C., Ward, Nigel, Williams, Sarah, Syme, Anna, Lonie, Andrew

Australian BioCommons is developing community-scale digital capacity, training and bioinformatics infrastructure to support Australia’s life scientists. We establish computational tools, systems and services with dedicated user support and provided

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::46833868a17f707db301fa73ee104089

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Autor: Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael, Ostrovsky, Alexander, Mahmoud, Alexandru, Lonie, Andrew, Syme, Anna, Fouilloux, Anne, Bretaudeau, Anthony, Kumar, Anup, Eschenlauer, Arthur, Desanto, Assunta, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn, Langhorst, Bradley, Carr, Bridget, Raubenolt, Bryan, Hyde, Cameron, Bromhead, Catherine, Barnett, Christopher, Royaux, Coline, Gallardo, Cristóbal, Fornika, Daniel, Baker, Dannon, Bouvier, Dave, Clements, Dave, de Lima Morais, David, Tabernero, David Lopez, Lariviere, Delphine, Nasr, Engy, Zambelli, Federico, Heyl, Florian, Psomopoulos, Fotis, Coppens, Frederik, Price, Gareth, Cuccuru, Gianmauro, Corguillé, Gildas Le, von Kuster, Greg, Akbulut, Gulsum Gudukbay, Rasche, Helena, Hotz, Hans-Rudolf, Eguinoa, Ignacio, Makunin, Igor, Ranawaka, Isuru, Taylor, James, Joshi, Jayadev, Hillman-Jackson, Jennifer, Chilton, John, Kamali, Kaivan, Suderman, Keith, Poterlowicz, Krzysztof, Yvan, Le Bras, Lopez-Delisle, Lucille, Sargent, Luke, Bassetti, Madeline, Tangaro, Marco Antonio, van den Beek, Marius, Čech, Martin, Bernt, Matthias, Fahrner, Matthias, Tekman, Mehmet, Föll, Melanie, Crusoe, Michael, Roncoroni, Miguel, Kucher, Natalie, Coraor, Nate, Stoler, Nicholas, Rhodes, Nick, Soranzo, Nicola, Pinter, Niko, Goonasekera, Nuwan, Moreno, Pablo, Videm, Pavankumar, Melanie, Petera, Mandreoli, Pietro, Jagtap, Pratik, Gu, Qiang, Weber, Ralf, Lazarus, Ross, Vorderman, Ruben, Hiltemann, Saskia, Golitsynskiy, Sergey, Garg, Shilpa, Bray, Simon, Gladman, Simon, Leo, Simone, Mehta, Subina, Griffin, Timothy, Jalili, Vahid, Yves, Vandenbrouck, Wen, Victor, Nagampalli, Vijay, Bacon, Wendi, de Koning, Willem, Maier, Wolfgang, Briggs, Peter

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, 2022, 50 (W1), pp.W345-W351. ⟨10.1093/nar/gkac247⟩
Afgan, E, Nekrutenko, A, Grüning, B A, Blankenberg, D, Goecks, J, Schatz, M C, Ostrovsky, A E, Mahmoud, A, Lonie, A J, Syme, A, Fouilloux, A, Bretaudeau, A, Nekrutenko, A, Kumar, A, Eschenlauer, A C, Desanto, A D, Guerler, A, Serrano-Solano, B, Batut, B, Grüning, B A, Langhorst, B W, Carr, B, Raubenolt, B A, Hyde, C J, Bromhead, C J, Barnett, C B, Royaux, C, Gallardo, C, Blankenberg, D, Fornika, D J, Baker, D, Bouvier, D, Clements, D, De Lima Morais, D A, Tabernero, D L, Lariviere, D, Nasr, E, Afgan, E, Zambelli, F, Heyl, F, Psomopoulos, F, Coppens, F, Price, G R, Cuccuru, G, Corguillé, G L, Von Kuster, G, Akbulut, G G, Rasche, H, Hans-Rudolf, H, Eguinoa, I, Makunin, I, Ranawaka, I J, Taylor, J P, Joshi, J, Hillman-Jackson, J, Chilton, J M, Kamali, K, Suderman, K, Poterlowicz, K, Yvan, L B, Lopez-Delisle, L, Sargent, L, Bassetti, M E, Tangaro, M A, Van Den Beek, M, Cech, M, Bernt, M, Fahrner, M, Tekman, M, Föll, M C, Schatz, M C, Crusoe, M R, Roncoroni, M, Kucher, N, Coraor, N, Stoler, N, Rhodes, N, Soranzo, N, Pinter, N, Goonasekera, N A, Moreno, P A, Videm, P, Melanie, P, Mandreoli, P, Jagtap, P D, Gu, Q, Weber, R J M, Lazarus, R, Vorderman, R H P, Hiltemann, S, Golitsynskiy, S, Garg, S, Bray, S A, Gladman, S L, Leo, S, Mehta, S P, Griffin, T J, Jalili, V, Yves, V, Wen, V, Nagampalli, V K, Bacon, W A, De Koning, W, Maier, W & Briggs, P J 2022, ' The Galaxy platform for accessible, reproducible and collaborative biomedical analyses : 2022 update ', Nucleic Acids Research, vol. 50, no. W1, pp. W345-W351 . https://doi.org/10.1093/nar/gkac247
Nucleic Acids Research, 50(W1), W345-W351. Oxford University Press

Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A thriving global community continues to use, maintain and contribute

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c391994be394041f6d06e629a94d035a
https://hal.science/hal-04142105

Robust public computational services supporting Genome Assembly and Annotation for Australian Researchers

Autor: Nelson, Tiffanie M., Bromhead, Catherine, Burke, Melissa, Gladman, Simon, Gustafsson, Johan, Gray, Mark, Gorse, Dominique, Hall, Christina, Lee, Justin, Manos, Steven, Makunin, Igor, Price, Gareth, Rhodes, Nick, Bassetti, Madeline, Bulgaris, Alejandro, Stott, Audrey, Thang, Mike W. C., Ward, Nigel, Christiansen, Jeffrey H., Lonie, Andrew

This poster was presented at the Genetics Society for Australasia 2021virtual conference, 6-8 October 2021. It described the resources available to support genome assembly and genome annotation identified through the Australian BioCommons community e

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::281344ebc128badfaa9d8d5b84f2db1f

Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data

Autor: Makunin Igor V, Hansen Martin A, Jung Chol-Hee, Korbie Darren J, Mattick John S

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 77 (2010)

Abstract Background The increasing interest in small non-coding RNAs (ncRNAs) such as microRNAs (miRNAs), small interfering RNAs (siRNAs) and Piwi-interacting RNAs (piRNAs) and recent advances in sequencing technology have yielded large numbers of sh

Externí odkaz: https://doaj.org/article/20949835987849d9a15e6def258b116f