The Genome of the Sea Urchin Strongylocentrotus purpuratus

Autor: Amro Hamdoun, Virginia Brockton, Huyen Dinh, Qiang Tu, Richard O. Hynes, Maria Ina Arnone, Wratko Hlavina, L. Courtney Smith, Mariano A. Loza, David R. Burgess, Matthew P. Hoffman, Florian Raible, Qiu Autumn Yuan, Geoffrey Okwuonu, Mark Y. Tong, Jennifer Hume, Donna Maglott, Manisha Goel, Olivier Fedrigo, Manuel L. Gonzalez-Garay, Celina E. Juliano, Judith Hernandez, Gary M. Wessel, William F. Marzluff, Audrey J. Majeske, Christian Gache, Louise Duloquin, Xingzhi Song, François Lapraz, Fowler J, Alexandre Souvorov, Jared V. Goldstone, Georgia Panopoulou, Sandra Hines, Kyle M. Judkins, Clay Davis, Christine G. Elsik, Paul Kitts, Mariano Loza-Coll, Greg Wray, Taku Hibino, Eric Röttinger, Allison M. Churcher, Annamaria Locascio, Arcady Mushegian, Masashi Kinukawa, Anna Reade, Katherine M. Buckley, I. R. Gibbons, Bert Gold, Aleksandar Milosavljevic, David Epel, Victor D. Vacquier, Ling Ling Pu, Vincenzo Cavalieri, Erin L. Allgood, Lan Zhang, Lynne V. Nazareth, Constantin N. Flytzanis, Ian Bosdet, Yi-Hsien Su, Zeev Pancer, Matthew L. Rowe, Robert C. Angerer, David R. McClay, William H. Klein, Rachel F. Gray, Julian L. Wong, Shunsuke Yaguchi, Robert Bellé, Aaron J. Mackey, Herath Jayantha Gunaratne, Karl Frederik Bergeron, Bruce P. Brandhorst, Greg Murray, Avis H. Cohen, Stephanie Bell, Kristin Tessmar-Raible, Ian K. Townley, Bertrand Cosson, Thomas D. Glenn, Jongmin Nam, Cynthia A. Bradham, Michael Dean, Joseph Chacko, Anthony J. Robertson, Margherita Branno, Valeria Matranga, K. James Durbin, Esther Miranda, Lili Chen, Eran Elhaik, Robert D. Burke, Rita A. Wright, Paola Oliveri, Sandra L. Lee, Gary W. Moy, Alexander E Primus, Shawn S. McCafferty, Cristina Calestani, David A. Garfield, Erica Sodergren, Karen Wilson, Joel Smith, Marco A. Marra, Cynthia Messier, Julia Morales, Kim D. Pruitt, Rachel Thorn, Rachel Gill, John S. Taylor, Mark E. Hahn, Victor Sapojnikov, Meredith Howard-Ashby, Lynne M. Angerer, Maurice R. Elphick, Kathy R. Foltz, Anne Marie Genevière, Justin T. Reese, Blanca E. Galindo, Kim C. Worley, Andrew Leone, Glen Humphrey, Kevin Berney, Olga Ermolaeva, George Miner, David P. Terwilliger, Elly Suk Hen Chow, Lora Lewis, Dan Graur, C. Titus Brown, Gerard Manning, Kevin J. Peterson, Angela Jolivet, Michele K. Anderson, Francesca Rizzo, Ekaterina Voronina, Thierry Lepage, Giorgio Matassi, Antonio Fernandez-Guerra, Mamoru Nomura, Charles A. Whittaker, James R.R. Whittle, James A. Coffman, George M. Weinstock, Mohammed M. Idris, Ashlan M. Musante, Sebastian D. Fugmann, Katherine D. Walton, Sorin Istrail, Shu-Yu Wu, Cerrissa Hamilton, Jonah Cool, Jacqueline E. Schein, Stacey M. Curry, Athula Wikramanayke, Seth Carbonneau, Blair J. Rossetti, Christopher E. Killian, Melissa J. Landrum, Amanda P. Rawson, Jenifer C. Croce, Ryan C. Range, Rahul Satija, John J. Stegeman, Yufeng Shen, Cavit Agca, Terry Gaasterland, Rocky Cheung, Takae Kiyama, Nikki Adams, Jonathan P. Rast, Robert Piotr Olinski, Andrew Cree, Mark Scally, Shuguang Liang, David A. Parker, Rebecca Thomason, Gretchen E. Hofmann, Michelle M. Roux, Ronghui Xu, Robert A. Obar, Enrique Arboleda, Odile Mulner-Lorillon, Shannon Dugan-Rocha, David J. Bottjer, Gabriele Amore, Manoj P. Samanta, Waraporn Tongprasit, Véronique Duboc, La Ronda Jackson, Fred H. Wilt, Viktor Stolc, Anna T. Neill, Michael Raisch, Pei Yun Lee, Jia L. Song, Margaret Morgan, Brian T. Livingston, Sofia Hussain, Zheng Wei, Bryan J. Cole, Tonya F. Severson, Victor V. Solovyev, Finn Hallböök, Donna M. Muzny, Christine A. Byrum, Albert J. Poustka, Xiuqian Mu, Andrew R. Jackson, Shin Heesun, Euan R. Brown, Nansheng Chen, Patrick Cormier, Ralph Haygood, Pedro Martinez, R. Andrew Cameron, D. Wang, Wendy S. Beane, Eric H. Davidson, Christie Kovar, Hemant Kelkar, Charles A. Ettensohn, Sham V. Nair, Robert L. Morris, Stefan C. Materna, Michael C. Thorndyke, Richard A. Gibbs, Dan O Mellott

Publikováno v: Science
Science, American Association for the Advancement of Science, 2006, 314 (5801), pp.941-52. 〈10.1126/science.1133609〉
Science, 2006, 314 (5801), pp.941-52. ⟨10.1126/science.1133609⟩
Science, American Association for the Advancement of Science, 2006, 314 (5801), pp.941-52. ⟨10.1126/science.1133609⟩
Science, 2006, 314 (5801), pp.941-952. ⟨10.1126/science.1133609⟩
Science, American Association for the Advancement of Science, 2006, 314 (5801), pp.941-952. ⟨10.1126/science.1133609⟩

We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus , a model for developmental and systems biology. The sequencing strategy combined whole-genome shotgun and bacterial artificial chromosome

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab75d66f0df34710687c6cf6a20ff49f
https://resolver.caltech.edu/CaltechAUTHORS:20130130-130039894

Genetic diversity and selection in Puerto Rican horses.

Autor: Wolfsberger WW; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico.; Biology Department, Uzhhorod National University, Uzhhorod, Ukraine., Ayala NM; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Castro-Marquez SO; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Irizarry-Negron VM; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Potapchuk A; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Shchubelka K; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico.; Biology Department, Uzhhorod National University, Uzhhorod, Ukraine., Potish L; Department of Forestry, Uzhhorod National University, Uzhhorod, Ukraine., Majeske AJ; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Oliver LF; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Lameiro AD; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Martínez-Cruzado JC; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico., Lindgren G; Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.; Livestock Genetics, Department of Biosystems, KU Leuven, Leuven, Belgium., Oleksyk TK; Department of Biological Sciences, Oakland University, Rochester, MI, USA. oleksyk@oakland.edu.; Biology Department, University of Puerto Rico at Mayaguez, Mayaguez, Puerto Rico. oleksyk@oakland.edu.; Biology Department, Uzhhorod National University, Uzhhorod, Ukraine. oleksyk@oakland.edu.

Publikováno v: Scientific reports [Sci Rep] 2022 Jan 11; Vol. 12 (1), pp. 515. Date of Electronic Publication: 2022 Jan 11.

Genomes of Three Closely Related Caribbean Amazons Provide Insight for Species History and Conservation.

Autor: Kolchanova S; Department of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. sofiia.kolchanova@upr.edu.; Department of Biology, University of Konstanz, 78464 Konstanz, Germany. sofiia.kolchanova@upr.edu.; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. sofiia.kolchanova@upr.edu., Kliver S; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. mahajrod@gmail.com., Komissarov A; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. ad3002@gmail.com., Dobrinin P; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. pdobrynin@gmail.com., Tamazian G; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. gaik.tamazian@gmail.com., Grigorev K; Department of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. kig2007@med.cornell.edu.; Department of Genetic Medicine, Weill Cornell Medical College, New York, NY 10021, USA. kig2007@med.cornell.edu., Wolfsberger WW; Department of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. wwolfsberger@oakland.edu.; Department of Biological Sciences, Oakland University, 118 Library Drive, Rochester, MI 48309, USA. wwolfsberger@oakland.edu.; Department of Biological Sciences, Uzhhorod National University, 88000 Uzhhorod, Ukraine. wwolfsberger@oakland.edu., Majeske AJ; Department of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. audrey.majeske@upr.edu.; Beaumont BioBank, William Beaumont Hospital, Royal Oak, MI 48073, USA. audrey.majeske@upr.edu., Velez-Valentin J; Conservation Program of the Puerto Rican Parrot, U.S. Fish and Wildlife Service, Rio Grande, PR 00745, USA. jafet_velez@fws.gov., Valentin de la Rosa R; The Recovery Program of the Puerto Rican Parrot at the Rio Abajo State Forest, Departamento de Recursos Naturales y Ambientales de Puerto Rico, Arecibo, PR 00613, USA. el.cotorro.electrico@gmail.com., Paul-Murphy JR; Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California Davis, Davis, CA 95616, USA. paulmurphy@ucdavis.edu., Guzman DS; Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California Davis, Davis, CA 95616, USA. guzman@ucdavis.edu., Court MH; Program in Individualized Medicine (PrIMe), Pharmacogenomics Laboratory, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, 100 Grimes Way, Pullman, WA 99164, USA. michael.court@wsu.edu., Rodriguez-Flores JL; Department of Genetic Medicine, Weill Cornell Medical College, New York, NY 10021, USA. jur2014@med.cornell.edu., Martínez-Cruzado JC; Department of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. juancarlos.martinez@upr.edu., Oleksyk TK; Department of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. oleksyk@oakland.edu.; Department of Biological Sciences, Oakland University, 118 Library Drive, Rochester, MI 48309, USA. oleksyk@oakland.edu.; Department of Biological Sciences, Uzhhorod National University, 88000 Uzhhorod, Ukraine. oleksyk@oakland.edu.

Publikováno v: Genes [Genes (Basel)] 2019 Jan 16; Vol. 10 (1). Date of Electronic Publication: 2019 Jan 16.

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola.

Autor: Grigorev K; Department of Biology, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico., Kliver S; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia., Dobrynin P; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia., Komissarov A; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia., Wolfsberger W; Department of Biology, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico.; Biology Department, Uzhhorod National University, Uzhhorod, Ukraine., Krasheninnikova K; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia., Afanador-Hernández YM; Department of Biology, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico., Brandt AL; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Division of Natural Sciences, St. Norbert College, De Pere, Wisconsin, USA., Paulino LA; Instituto Tecnológico de Santo Domingo (INTEC), Santo Domingo, Dominican Republic., Carreras R; Instituto Tecnológico de Santo Domingo (INTEC), Santo Domingo, Dominican Republic., Rodríguez LE; Instituto Tecnológico de Santo Domingo (INTEC), Santo Domingo, Dominican Republic., Núñez A; Department of Conservation and Science, Parque Zoologico Nacional (ZOODOM), Santo Domingo, Dominican Republic., Brandt JR; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Department of Biology, Marian University, Fond du Lac, Wisconsin, USA., Silva F; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos, s/n, 4450-208 Porto, Portugal.; Department of Biology, Faculty of Sciences, University of Porto. Rua do Campo Alegre, 4169-007 Porto, Portugal., Hernández-Martich JD; Instituto de Investigaciones Botánicas y Zoológicas, Universidad Autónoma de Santo Domingo, Santo Domingo, Dominican Republic., Majeske AJ; Department of Biology, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico., Antunes A; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos, s/n, 4450-208 Porto, Portugal.; Department of Biology, Faculty of Sciences, University of Porto. Rua do Campo Alegre, 4169-007 Porto, Portugal., Roca AL; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA., O'Brien SJ; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia.; Oceanographic Center, Nova Southeastern University, Fort Lauderdale, Florida, USA., Martínez-Cruzado JC; Department of Biology, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico., Oleksyk TK; Department of Biology, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico.; Biology Department, Uzhhorod National University, Uzhhorod, Ukraine.

Publikováno v: GigaScience [Gigascience] 2018 Jun 01; Vol. 7 (6).

The Sp185/333 immune response genes and proteins are expressed in cells dispersed within all major organs of the adult purple sea urchin.

Autor: Majeske AJ; 1Department of Biological Sciences, George Washington University, Washington, DC, USA., Oleksyk TK, Smith LC

Publikováno v: Innate immunity [Innate Immun] 2013 Dec; Vol. 19 (6), pp. 569-87. Date of Electronic Publication: 2013 Feb 12.