Bayesian inference of admixture graphs on Native American and Arctic populations

Autor: Nielsen, S. V. (Svend V.), Vaughn, A. H. (Andrew H.), Leppälä, K. (Kalle), Landis, M. J. (Michael J.), Mailund, T. (Thomas), Nielsen, R. (Rasmus)

Admixture graphs are mathematical structures that describe the ancestry of populations in terms of divergence and merging (admixing) of ancestral populations as a graph. An admixture graph consists of a graph topology, branch lengths, and admixture p

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______2423::b6895a1684120a4908c96f825871ee5e
http://urn.fi/urn:nbn:fi-fe2023050942210

Using colored Petri nets to construct coalescent hidden Markov models : automatic translation from demographic specifications to efficient inference methods

Autor: Mailund, T., Halager, A., Westergaard, M., Haddad, S., Pomello, L.

Publikováno v: Lecture Notes in Computer Science ISBN: 9783642311307
Petri Nets
Applications and Theory of Petri Nets (33rd International Conference, Petri Nets 2012, Hamburg, Germany, Newcastle, June 25-29, 2012. Proceedings), 32-50
STARTPAGE=32;ENDPAGE=50;TITLE=Applications and Theory of Petri Nets (33rd International Conference, Petri Nets 2012, Hamburg, Germany, Newcastle, June 25-29, 2012. Proceedings)

Biotechnological improvements over the last decade has made it economically and technologically feasible to collect large DNA sequence data from many closely related species. This enables us to study the detailed evolutionary history of recent specia

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c37352f6ace198905e5fbd53ab6eadbc
https://doi.org/10.1007/978-3-642-31131-4_3

A New Powerful Method for Genome-wide Association Mapping Using Local Genealogies in a Mixed Model

Autor: Goutam Sahana, Mailund, T., Lund, M. S., Guldbrandtsen, B.

Publikováno v: Sahana, G, Mailund, T, Lund, M S & Guldbrandtsen, B 2010, A New Powerful Method for Genome-wide Association Mapping Using Local Genealogies in a Mixed Model . in CD communication-Proceeding, Paper 305 . Gesellschaft für Tierzuchtwissenschaften e. V., Leipzig, Germany, 01/08/2010 .
Sahana, G, Mailund, T, Lund, M S & Guldbrandtsen, B 2010, A New Powerful Method for Genome-wide Association Mapping Using Local Genealogies in a Mixed Model . in Abstracts . Gesellschaft für Tierzuchtwissenschaften e. V., pp. 109, Leipzig, Germany, 01/08/2010 .
Aarhus University

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::586691752079404118b57f21a08be26d
https://pure.au.dk/portal/da/publications/a-new-powerful-method-for-genomewide-association-mapping-using-local-genealogies-in-a-mixed-model(3c048b10-b33a-11df-80f4-000ea68e967b).html

Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon

Autor: Mailund, T, Schauser, Leif

Publikováno v: Mailund, T & Schauser, L 2006 ' Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon ' .

GeneRecon is a software package for linkage disequilibrium mapping using coalescent theory. It is based on Bayesian Markov-chain Monte Carlo (MCMC) method for fine-scale linkage-disequilibrium gene mapping using high-density marker maps. GeneRecon ex

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pure_au_____::fe55f12244130b400084f66b3e6a912c
https://pure.au.dk/portal/da/publications/getting-started-with-generecon--an-introduction-to-the-association-mapping-tool-generecon(38093f10-bf06-11da-bee9-02004c4f4f50).html

CoaSim Guile Manual — Using the Guile-based CoaSim Simulator

Autor: Mailund, T

Publikováno v: Mailund, T 2006 ' CoaSim Guile Manual — Using the Guile-based CoaSim Simulator ' .

CoaSim is a tool for simulating the coalescent process with recombination and geneconversion, under either constant population size or exponential population growth. It effectively constructs the ancestral recombination graph for a given number of ch

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pure_au_____::4b5495f5cff2f6e8b6b1cf9583e85cdf
https://pure.au.dk/portal/da/publications/coasim-guile-manual--using-the-guilebased-coasim-simulator(45d31a70-a485-11db-bee9-02004c4f4f50).html