Zobrazeno 1 - 10
of 131
pro vyhledávání: '"Maido Remm"'
Autor:
Fanny-Dhelia Pajuste, Maido Remm
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-10 (2023)
Abstract Genomes exhibit large regions with segmental copy number variation, many of which include entire genes and are multiallelic. We have developed a computational method GeneToCN that counts the frequencies of gene-specific k-mers in FASTQ files
Externí odkaz:
https://doaj.org/article/7f41ced26aeb4e4f854aca02f2348d37
Autor:
Nemailla Bonturi, Marina Julio Pinheiro, Paola Monteiro de Oliveira, Eka Rusadze, Tobias Eichinger, Gintare Liudžiūtė, Juliano Sabedotti De Biaggi, Age Brauer, Maido Remm, Everson Alves Miranda, Rodrigo Ledesma-Amaro, Petri-Jaan Lahtvee
Publikováno v:
Metabolic Engineering Communications, Vol 15, Iss , Pp e00200- (2022)
Rhodotorula toruloides is a potential chassis for microbial cell factories as this yeast can metabolise different substrates into a diverse range of natural products, but the lack of efficient synthetic biology tools hinders its applicability. In thi
Externí odkaz:
https://doaj.org/article/0ede40c730b04578a75db99def1240bc
Autor:
Agnese Bellabarba, Giovanni Bacci, Francesca Decorosi, Erki Aun, Elisa Azzarello, Maido Remm, Luciana Giovannetti, Carlo Viti, Alessio Mengoni, Francesco Pini
Publikováno v:
mSystems, Vol 6, Iss 4 (2021)
ABSTRACT Associations between leguminous plants and symbiotic nitrogen-fixing rhizobia are a classic example of mutualism between a eukaryotic host and a specific group of prokaryotic microbes. Although this symbiosis is in part species specific, dif
Externí odkaz:
https://doaj.org/article/4bca76715ae74699b63bf7b67c2fbcea
Publikováno v:
Mobile DNA, Vol 10, Iss 1, Pp 1-13 (2019)
Abstract Background Recently, alignment-free sequence analysis methods have gained popularity in the field of personal genomics. These methods are based on counting frequencies of short k-mer sequences, thus allowing faster and more robust analysis c
Externí odkaz:
https://doaj.org/article/39233ce8461147e697151abc2ba7650f
Autor:
Erki Aun, Veljo Kisand, Mailis Laht, Kaidi Telling, Piret Kalmus, Ülo Väli, Age Brauer, Maido Remm, Tanel Tenson
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
In this study, we aimed to characterize the population structure, drug resistance mechanisms, and virulence genes of Enterococcus isolates in Estonia. Sixty-one Enterococcus faecalis and 34 Enterococcus faecium isolates were collected between 2012 an
Externí odkaz:
https://doaj.org/article/584cb7deb3fa4c48a4fa12bf9064ba88
Publikováno v:
PLoS Genetics, Vol 16, Iss 8, p e1008981 (2020)
Tribbles homolog 3 (TRIB3) is pseudokinase involved in intracellular regulatory processes and has been implicated in several diseases. In this article, we report that human TRIB3 promoter contains a 33-bp variable number tandem repeat (VNTR) and char
Externí odkaz:
https://doaj.org/article/a243553c8728466980fe2bfd11427ed8
Publikováno v:
Frontiers in Plant Science, Vol 11 (2020)
Fast and reliable analytical methods for the identification of plants from metagenomic samples play an important role in identifying the components of complex mixtures of processed biological materials, including food, herbal products, gut contents o
Externí odkaz:
https://doaj.org/article/b84886fc8f4b488eb150cb894ba78e6a
Autor:
Kaidi Telling, Mailis Laht, Age Brauer, Maido Remm, Veljo Kisand, Matti Maimets, Tanel Tenson, Irja Lutsar
Publikováno v:
BMC Infectious Diseases, Vol 18, Iss 1, Pp 1-10 (2018)
Abstract Background We aimed to identify the main spreading clones, describe the resistance mechanisms associated with carbapenem- and/or multidrug-resistant P. aeruginosa and characterize patients at risk of acquiring these strains in Estonian hospi
Externí odkaz:
https://doaj.org/article/cfcaa61690ee4fb9938e2469cf7c061b
Autor:
Epp Sepp, Reidar Andreson, Arta Balode, Anastasia Bilozor, Age Brauer, Svetlana Egorova, Kristi Huik, Marina Ivanova, Lidia Kaftyreva, Siiri Kõljalg, Triinu Kõressaar, Maria Makarova, Jolanta Miciuleviciene, Kristiine Pai, Maido Remm, Tiiu Rööp, Paul Naaber
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
Extended-spectrum beta-lactamases (ESBL) and AmpC producing-Escherichia coli have spread worldwide, but data about ESBL-producing-E. coli in the Northern and Eastern regions of Europe is scant. The aim of this study has been to describe the phenotypi
Externí odkaz:
https://doaj.org/article/d3e9cf62b5694f7b9cc7e46e9a1e287e
Autor:
Fanny-Dhelia Pajuste, Lauris Kaplinski, Märt Möls, Tarmo Puurand, Maarja Lepamets, Maido Remm
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-10 (2017)
Abstract We have developed a computational method that counts the frequencies of unique k-mers in FASTQ-formatted genome data and uses this information to infer the genotypes of known variants. FastGT can detect the variants in a 30x genome in less t
Externí odkaz:
https://doaj.org/article/e60e1692858c4df3bb8f5736e3177bde