Connectivity Analysis of Single-cell RNA-seq Derived Transcriptional Signatures

Autor: Mahi, Naim

With the recent progress in high-throughput sequencing technologies, unprecedented amount of data from multiple omics modalities including genomics, transcriptomics, proteomics, and small-molecule data have become available. Accessibility and reusabi

Externí odkaz: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1613748441148963

Baseline TREM-1 Whole Blood Gene Expression Does Not Predict Response to Adalimumab Treatment in Patients with Ulcerative Colitis or Crohn's Disease in the SERENE Studies.

Autor: Verstockt, Bram, Pivorunas, Valerie, Mahi, Naim Al, Smaoui, Nizar, Guay, Heath, Kennedy, Nicholas A, Goodhand, James R, Lin, Simeng, Bai, Benjamin Y H, Hanauer, Stephen B, Ferrante, Marc, Panés, Julian, Vermeire, Séverine

Publikováno v: Journal of Crohn's & Colitis; Apr2024, Vol. 18 Issue 4, p493-505, 13p

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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

Autor: Keenan, Alexandra B, Jenkins, Sherry L, Jagodnik, Kathleen M, Koplev, Simon, He, Edward, Torre, Denis, Wang, Zichen, Dohlman, Anders B, Silverstein, Moshe C, Lachmann, Alexander, Kuleshov, Maxim V, Ma'ayan, Avi, Stathias, Vasileios, Terryn, Raymond, Cooper, Daniel, Forlin, Michele, Koleti, Amar, Vidovic, Dusica, Chung, Caty, Schürer, Stephan C, Vasiliauskas, Jouzas, Pilarczyk, Marcin, Shamsaei, Behrouz, Fazel, Mehdi, Ren, Yan, Niu, Wen, Clark, Nicholas A, White, Shana, Mahi, Naim, Zhang, Lixia, Kouril, Michal, Reichard, John F, Sivaganesan, Siva, Medvedovic, Mario, Meller, Jaroslaw, Koch, Rick J, Birtwistle, Marc R, Iyengar, Ravi, Sobie, Eric A, Azeloglu, Evren U, Kaye, Julia, Osterloh, Jeannette, Haston, Kelly, Kalra, Jaslin, Finkbiener, Steve, Li, Jonathan, Milani, Pamela, Adam, Miriam, Escalante-Chong, Renan, Sachs, Karen, Lenail, Alex, Ramamoorthy, Divya, Fraenkel, Ernest, Daigle, Gavin, Hussain, Uzma, Coye, Alyssa, Rothstein, Jeffrey, Sareen, Dhruv, Ornelas, Loren, Banuelos, Maria, Mandefro, Berhan, Ho, Ritchie, Svendsen, Clive N, Lim, Ryan G, Stocksdale, Jennifer, Casale, Malcolm S, Thompson, Terri G, Wu, Jie, Thompson, Leslie M, Dardov, Victoria, Venkatraman, Vidya, Matlock, Andrea, Van Eyk, Jennifer E, Jaffe, Jacob D, Papanastasiou, Malvina, Subramanian, Aravind, Golub, Todd R, Erickson, Sean D, Fallahi-Sichani, Mohammad, Hafner, Marc, Gray, Nathanael S, Lin, Jia-Ren, Mills, Caitlin E, Muhlich, Jeremy L, Niepel, Mario, Shamu, Caroline E, Williams, Elizabeth H, Wrobel, David, Sorger, Peter K, Heiser, Laura M, Gray, Joe W, Korkola, James E, Mills, Gordon B, LaBarge, Mark, Feiler, Heidi S, Dane, Mark A, Bucher, Elmar, Nederlof, Michel, Sudar, Damir, Gross, Sean

Publikováno v: Cell systems, vol 6, iss 1

The Library of Integrated Network-Based Cellular Signatures (LINCS) is an NIH Common Fund program that catalogs how human cells globally respond to chemical, genetic, and disease perturbations. Resources generated by LINCS include experimental and co

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::0d5ede2ec19252bd3d6a2811a8ea09ec
https://escholarship.org/uc/item/18t2041r

LINCS Experimental Metadata and Processing Pipelines

Autor: Cooper, Daniel, Dušica Vidović, Stathias, Vasileios, Meller, Jarek, Shamsaei, Behrouz, Niu, Wen, Najafabadi, Mehdi Fazel, Mahi, Naim, Vasiliauskas, Juozas, Pillai, Ajay, Medvedović, Mario, Schürer, Stephan

The NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program generates extensive multidimensional datasets using a variety of assay formats and technologies. Integration and analysis of diverse LINCS datasets depend on the availabi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f0d11510e66114031ee907a00fb95a4f