Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Magdalena Rother"'
Autor:
Rebecca Smith, Siham Zentout, Magdalena Rother, Nicolas Bigot, Catherine Chapuis, Alexandra Mihuț, Florian Franz Zobel, Ivan Ahel, Haico van Attikum, Gyula Timinszky, Sébastien Huet
Publikováno v:
Nature Structural and Molecular Biology
Nature Structural and Molecular Biology, 2023, ⟨10.1038/s41594-023-00977-x⟩
Nature Structural and Molecular Biology, 2023, ⟨10.1038/s41594-023-00977-x⟩
International audience; Poly(ADP-ribose) polymerase 1 (PARP1) activity is regulated by its co-factor histone poly(ADP-ribosylation) factor 1 (HPF1). The complex formed by HPF1 and PARP1 catalyzes ADP-ribosylation of serine residues of proteins near D
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::edc378b510b7272ffed1cfa264e6011f
https://doi.org/10.1038/s41594-023-00977-x
https://doi.org/10.1038/s41594-023-00977-x
Autor:
Katarzyna Mikolajczak, Alexander Serganov, Christina Waldsich, Song Cao, Anna Philips, Samuel C. Flores, Rhiju Das, Magdalena Rother, Dinshaw J. Patel, Christopher A. Lavender, Tomasz Puton, Fredrick Sijenyi, Irina Tuszynska, Michal J. Boniecki, John SantaLucia, Kevin M. Weeks, Marcin Skorupski, José Almeida Cruz, Lili Huang, Parin Sripakdeevong, Marc Frédérick Blanchet, Janusz M. Bujnicki, Shi-Jie Chen, Thomas Hermann, François Major, Nikolay V. Dokholyan, Tomasz Sołtysiński, Kristian Rother, Eric Westhof, Michael Wildauer, Neocles B. Leontis, Feng Ding, Véronique Lisi
Publikováno v:
RNA. 18:610-625
We report the results of a first, collective, blind experiment in RNA three-dimensional (3D) structure prediction, encompassing three prediction puzzles. The goals are to assess the leading edge of RNA structure prediction techniques; compare existin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4bd4efb7aa9ecba8d38c9bc26d7f039c
https://doi.org/10.1261/rna.031054.111
https://doi.org/10.1261/rna.031054.111
Publikováno v:
Nucleic Acids Research
RNA is a large group of functionally important biomacromolecules. In striking analogy to proteins, the function of RNA depends on its structure and dynamics, which in turn is encoded in the linear sequence. However, while there are numerous methods f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e60e7491d59693f23550ea441bfd7d97
http://europepmc.org/articles/PMC3105415
http://europepmc.org/articles/PMC3105415
Publikováno v:
Journal of Molecular Modeling
In analogy to proteins, the function of RNA depends on its structure and dynamics, which are encoded in the linear sequence. While there are numerous methods for computational prediction of protein 3D structure from sequence, there have been very few
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa1f29134e8d2e9298ec9e3797705a19
https://doi.org/10.1007/s00894-010-0951-x
https://doi.org/10.1007/s00894-010-0951-x
Publikováno v:
Briefings in Bioinformatics. 11:582-586
Delivering hands-on tutorials on bioinformatics software and web applications is a challenging didactic scenario. The main reason is that trainees have heterogeneous backgrounds, different previous knowledge and vary in learning speed. In this articl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b458391e0a33df446cf708942b5b1cea
https://doi.org/10.1093/bib/bbq024
https://doi.org/10.1093/bib/bbq024
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1097
This chapter gives an overview over the current methods for automated modeling of RNA structures, with emphasis on template-based methods. The currently used approaches to RNA modeling are presented with a side view on the protein world, where many s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::50a6d643c589168e2c62a6fc683df59a
https://pubmed.ncbi.nlm.nih.gov/24639169
https://pubmed.ncbi.nlm.nih.gov/24639169
Autor:
Karolina Gołąbek, Andrzej Wiczkowski, Anna Slemp-Migiel, Joanna Katarzyna Strzelczyk, Magdalena Rother
Publikováno v:
Scopus-Elsevier
One of the mechanisms of Candida albicans resistance to azole drugs used in antifungal therapy relies on increased expression and presence of point mutations in the ERG11 gene that encodes sterol 14α demethylase (14DM), an enzyme which is the primar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2b174ce797ec6a4527e9f8331f52d9c8
https://doi.org/10.18388/abp.2013_2019
https://doi.org/10.18388/abp.2013_2019
Publikováno v:
Methods in Molecular Biology ISBN: 9781627037082
This chapter gives an overview over the current methods for automated modeling of RNA structures, with emphasis on template-based methods. The currently used approaches to RNA modeling are presented with a side view on the protein world, where many s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f5dcd1d9c3f7344c60c31f018691ccce
https://doi.org/10.1007/978-1-62703-709-9_18
https://doi.org/10.1007/978-1-62703-709-9_18
Autor:
Janusz M. Bujnicki, Kristian Rother, Paweł Łukasz, Magdalena Rother, Tomasz Puton, Konrad Tomala, Michal J. Boniecki
Publikováno v:
Nucleic Acids and Molecular Biology ISBN: 9783642257391
In analogy to proteins, the function of RNA depends on its structure and dynamics, which are encoded in the linear sequence. While there are numerous methods for computational prediction of protein 3D structure from sequence, there have been however
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f4794be50c51fa8bda71adf9e23fccd3
https://doi.org/10.1007/978-3-642-25740-7_5
https://doi.org/10.1007/978-3-642-25740-7_5
Publikováno v:
Briefings in Bioinformatics
Noncoding RNAs perform important roles in the cell. As their function is tightly connected with structure, and as experimental methods are time-consuming and expensive, the field of RNA structure prediction is developing rapidly. Here, we present a d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f8abaf944fb720acfb259b9cf26c66bf