Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

Autor: Methé, B. A., Nelson, K. E., Eisen, J. A., Paulsen, I. T., Nelson, W., Heidelberg, J. F., Wu, D., Wu, M., Ward, N., Beanan, M. J., Dodson, R. J., Madupu, R., Brinkac, L. M., Daugherty, S. C., DeBoy, R. T., Durkin, A. S., Gwinn, M., Kolonay, J. F., Sullivan, S. A., Haft, D. H., Selengut, J., Davidsen, T. M., Zafar, N., White, O., Tran, B., Romero, C., Weidman, J., Khouri, H., Feldblyum, T. V., Utterback, T. R., Van Aken, S. E., Lovley, D. R., Fraser, C. M.

Publikováno v: Science, 2003 Dec 01. 302(5652), 1967-1969.

Externí odkaz: https://www.jstor.org/stable/3835733

Genome sequence of the sulfate-reducing thermophilic bacterium Thermodesulfovibrio yellowstonii strain DSM 11347T(phylum Nitrospirae)

Autor: Bhatnagar, S, Badger, JH, Madupu, R, Khouri, HM, O'Connor, EM, Robb, FT, Ward, NL, Eisen, JA

Publikováno v: Bhatnagar, S; Badger, JH; Madupu, R; Khouri, HM; O'Connor, EM; Robb, FT; et al.(2015). Genome sequence of the sulfate-reducing thermophilic bacterium Thermodesulfovibrio yellowstonii strain DSM 11347T(phylum Nitrospirae). Genome Announcements, 3(1). doi: 10.1128/genomeA.01489-14. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/45h7g5nc

© 2015 Bhatnagar et al. Here, we present the complete 2,003,803-bp genome of a sulfate-reducing thermophilic bacterium, Thermodesulfovibrio yellowstonii strain DSM 11347T.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::acacd6f43175fc63508ab7f1fe28df16
http://www.escholarship.org/uc/item/45h7g5nc

The Gene Ontology in 2010: extensions and refinements

Autor: Berardini, Tz, Li, D, Huala, E, Bridges, S, Burgess, S, Mccarthy, F, Carbon, S, Lewis, Se, Mungall, Cj, Abdulla, A, Wood, V, Feltrin, E, Valle, Giorgio, Chisholm, Rl, Fey, P, Gaudet, P, Kibbe, W, Basu, S, Bushmanova, Y, Eilbeck, K, Siegele, Da, Mcintosh, B, Renfro, D, Zweifel, A, Hu, Jc, Ashburner, M, Tweedie, S, ALAM FARUQUE, Y, Apweiler, R, Auchinchloss, A, Bairoch, A, Barrell, D, Binns, D, Blatter, Mc, Bougueleret, L, Boutet, E, Breuza, L, Bridge, A, Browne, P, Chan, Wm, Coudert, E, Daugherty, L, Dimmer, E, Eberhardt, R, Estreicher, A, Famiglietti, L, FERRO ROJAS, S, Feuermann, M, Foulger, R, GRUAZ GUMOWSKI, N, Hinz, U, Huntley, R, Jimenez, S, Jungo, F, Keller, G, Laiho, K, Legge, D, Lemercier, P, Lieberherr, D, Magrane, M, O'Donovan, C, Pedruzzi, I, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stanley, E, Stutz, A, Sundaram, S, Tognolli, M, Xenarios, I, Harris, Ma, Deegan, Ji, Ireland, A, Lomax, J, Jaiswal, P, Chibucos, M, Giglio, Mg, Wortman, J, Hannick, L, Madupu, R, Botstein, D, Dolinski, K, Livstone, Ms, Oughtred, R, Blake, Ja, Bult, C, Diehl, Ad, Dolan, M, Drabkin, H, Eppig, Jt, Hill, Dp, Ni, L, Ringwald, M, Sitnikov, D, Collmer, C, TORTO ALALIBO, T, Laulederkind, S, Shimoyama, M, Twigger, S, D'Eustachio, P, Matthews, L, Balakrishnan, R, Binkley, G, Cherry, Jm, Christie, Kr, Costanzo, Mc, Engel, Sr, Fisk, Dg, Hirschman, Je, Hitz, Bc, Hong, El, Krieger, Cj, Miyasato, Sr, Nash, Rs, Park, J, Skrzypek, Ms, Weng, S, Wong, Ed, Aslett, M, Chan, J, Kishore, R, Sternberg, P, VAN AUKE, K, Khodiyar, Vk, Lovering, Rc, Talmud, Pj, Howe, D, Westerfield, M.

Publikováno v: Nucleic Acids Research, vol. 38, no. Database issue, pp. D331-D335
Nucleic Acids Research

The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2e4f228dee6f491f716236b54d7dbb31
https://serval.unil.ch/resource/serval:BIB_C3C5174BCA6C.P001/REF.pdf

PLoS One

Autor: Hartman, A., Norais, C., Badger, J., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.

Publikováno v: PLoS ONE

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1874::b350566e2e4424e2115ba271a8bb3912
https://hdl.handle.net/11858/00-001M-0000-0010-571E-C11858/00-001M-0000-0010-571F-A

Evolution of sensory complexity recorded in a myxobacterial genome

Autor: Goldman, BS, Nierman, WC, Kaiser, D, Slater, SC, Durkin, AS, Eisen, JA, Ronning, CM, Barbazuk, WB, Blanchard, M, Field, C, Halling, C, Hinkle, G, Iartchuk, O, Kim, HS, Mackenzie, C, Madupu, R, Miller, N, Shvartsbeyn, A, Sullivan, SA, Vaudin, M, Wiegand, R, Kaplan, HB

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, vol 103, iss 41

Myxobacteria are single-celled, but social, eubacterial predators. Upon starvation they build multicellular fruiting bodies using a developmental program that progressively changes the pattern of cell movement and the repertoire of genes expressed. D

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::40f676a27805706d4de692c7c36581f5
https://escholarship.org/uc/item/6tw5f262