Výsledky vyhledávání - "Madeline Deniaud"

Akademický článek

Evolution of chemokine receptors is driven by mutations in the sodium binding site.

Autor: Bruck Taddese, Madeline Deniaud, Antoine Garnier, Asma Tiss, Hajer Guissouma, Hervé Abdi, Daniel Henrion, Marie Chabbert

Publikováno v: PLoS Computational Biology, Vol 14, Iss 6, p e1006209 (2018)

Chemokines and their receptors (members of the GPCR super-family) are involved in a wide variety of physiological processes and diseases; thus, understanding the specificity of the chemokine receptor family could help develop new receptor specific dr

Externí odkaz: https://doaj.org/article/d9ed8eaa03cf45e8ba96f39c3014dcad

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MatrixDB: integration of new data with a focus on glycosaminoglycan interactions

Autor: Sylvie Ricard-Blum, Madeline Deniaud, Alain Rivet, Serge Pérez, Olivier Clerc, Sylvain D. Vallet, Alexandra Naba, Nicolas Thierry-Mieg

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2019, 47 (D1), pp.D376-D381. ⟨10.1093/nar/gky1035⟩

International audience; MatrixDB (http://matrixdb.univ-lyon1.fr/) is an interaction database focused on biomolecular interactions established by extracellular matrix (ECM) proteins and glycosaminoglycans (GAGs). It is an active member of the Internat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::75404a542ab7cdb8da1685a82cca1f29

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Bios2cor: an R package integrating dynamic and evolutionary correlations to identify functionally important residues in proteins

Autor: Bruck Taddese, Daniel Henrion, Marie Chabbert, Antoine Garnier, Madeline Deniaud

Publikováno v: Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2021, 37 (16), pp.2483-2484. ⟨10.1093/bioinformatics/btab002⟩
Bioinformatics, 2021, 37 (16), pp.2483-2484. ⟨10.1093/bioinformatics/btab002⟩

Summary Both dynamic correlations in protein sidechain motions during molecular dynamics (MD) simulations and evolutionary correlations in multiple sequence alignments (MSAs) of homologous proteins may reveal functionally important residues. We devel

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d9c5da89f668b7dbdf6894244968a0e1
https://hal-cnrs.archives-ouvertes.fr/hal-03431450/document

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Building Protein‐Protein and Protein‐Glycosaminoglycan Interaction Networks Using MatrixDB, the Extracellular Matrix Interaction Database

Autor: Olivier Clerc, Sylvie Ricard-Blum, Sylvain D. Vallet, Madeline Deniaud, Coline Berthollier

Publikováno v: Current Protocols. 1

The interaction database MatrixDB reports protein-protein and protein-glycosaminoglycan interactions in human, mammalian, and model organisms, involving at least one extracellular matrix (ECM) constituent, namely full-length proteins, ECM multimeric

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e6ac86e78c4ad8560b5b625f2c21979
https://doi.org/10.1002/cpz1.47

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Co-Variation Approaches to the Evolution of Protein Families

Autor: Bruck Taddese, Daniel Henrion, Julien Pelé, Hervé Abdi, Marie Chabbert, Madeline Deniaud, Antoine Garnier

Publikováno v: Advanced Techniques in Biology & Medicine
Advanced Techniques in Biology & Medicine, 2017, 05 (04), ⟨10.4172/2379-1764.1000250⟩
Advanced Techniques in Biology & Medicine, Omics Publishing Group, 2017, 05 (04), ⟨10.4172/2379-1764.1000250⟩

In a multiple sequence alignment, sequence co-variations result from structural, functional, and/or phylogenetic constraints. Numerous methods have been developed to calculate co-variation scores, but few studies have compared these methods to identi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f60032b88278d8f77611c30166014402
https://hal.science/hal-02318884/document

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