Artificial intelligence and neoantigens: paving the path for precision cancer immunotherapy.

Autor: Bulashevska A; Host-Pathogen-Interactions, Paul-Ehrlich-Institut, Langen, Germany., Nacsa Z; Host-Pathogen-Interactions, Paul-Ehrlich-Institut, Langen, Germany., Lang F; TRON - Translational Oncology at the University Medical Center of the Johannes Gutenberg University gGmbH, Mainz, Germany., Braun M; Host-Pathogen-Interactions, Paul-Ehrlich-Institut, Langen, Germany., Machyna M; Host-Pathogen-Interactions, Paul-Ehrlich-Institut, Langen, Germany., Diken M; TRON - Translational Oncology at the University Medical Center of the Johannes Gutenberg University gGmbH, Mainz, Germany., Childs L; Host-Pathogen-Interactions, Paul-Ehrlich-Institut, Langen, Germany., König R; Host-Pathogen-Interactions, Paul-Ehrlich-Institut, Langen, Germany.

Publikováno v: Frontiers in immunology [Front Immunol] 2024 May 29; Vol. 15, pp. 1394003. Date of Electronic Publication: 2024 May 29 (Print Publication: 2024).

The International Virus Bioinformatics Meeting 2023.

Autor: Hufsky F; European Virus Bioinformatics Center, 07743 Jena, Germany.; RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, 07743 Jena, Germany., Abecasis AB; European Virus Bioinformatics Center, 07743 Jena, Germany.; Global Health and Tropical Medicine, GHTM, Associate Laboratory in Translation and Innovation towards Global Health, LA-REAL, Instituto de Higiene e Medicina Tropical, IHMT, Universidade NOVA de Lisboa, UNL, Rua da Junqueira 100, 1349-008 Lisboa, Portugal., Babaian A; European Virus Bioinformatics Center, 07743 Jena, Germany.; Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 3E1, Canada.; Donnelly Centre, University of Toronto, Toronto, ON M5S 1A1, Canada., Beck S; Leibniz Institute of Virology, Department Viral Zoonoses-One Health, 20251 Hamburg, Germany., Brierley L; European Virus Bioinformatics Center, 07743 Jena, Germany.; Department of Health Data Science, University of Liverpool, Liverpool L69 3GF, UK., Dellicour S; European Virus Bioinformatics Center, 07743 Jena, Germany.; Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, CP160/12, 50 av. FD Roosevelt, 1050 Bruxelles, Belgium.; Laboratory for Clinical and Epidemiological Virology, Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, University of Leuven, 3000 Leuven, Belgium., Eggeling C; European Virus Bioinformatics Center, 07743 Jena, Germany.; Institute of Applied Optics and Biophysics, Friedrich Schiller University Jena, Max-Wien-Platz 1, 07743 Jena, Germany., Elena SF; European Virus Bioinformatics Center, 07743 Jena, Germany.; Institute for Integrative Systems Biology (I2SysBio), CSIC-Universitat de Valencia, Catedratico Agustin Escardino 9, 46980 Valencia, Spain., Gieraths U; Institute of Virology, Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany., Ha AD; Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA., Harvey W; The Roslin Institute, University of Edinburgh, Edinburgh EH25 9RG, UK., Jones TC; European Virus Bioinformatics Center, 07743 Jena, Germany.; Institute of Virology, Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany.; Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK., Lamkiewicz K; European Virus Bioinformatics Center, 07743 Jena, Germany.; RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, 07743 Jena, Germany., Lovate GL; European Virus Bioinformatics Center, 07743 Jena, Germany.; RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, 07743 Jena, Germany., Lücking D; Max-Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany., Machyna M; Paul-Ehrlich-Institut, Host-Pathogen-Interactions, 63225 Langen, Germany., Nishimura L; European Virus Bioinformatics Center, 07743 Jena, Germany.; Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima 411-8540, Japan.; Human Genetics Laboratory, National Institute of Genetics, Mishima 411-8540, Japan., Nocke MK; European Virus Bioinformatics Center, 07743 Jena, Germany.; Department for Molecular & Medical Virology, Ruhr University Bochum, 44801 Bochum, Germany., Renard BY; European Virus Bioinformatics Center, 07743 Jena, Germany.; Digital Engineering Faculty, Hasso Plattner Institute, University of Potsdam, 14482 Potsdam, Germany., Sakaguchi S; Department of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Osaka 569-8686, Japan., Sakellaridi L; Institute for Virology and Immunobiology, University of Würzburg, Versbacher Str. 7, 97078 Würzburg, Germany., Spangenberg J; European Virus Bioinformatics Center, 07743 Jena, Germany.; RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, 07743 Jena, Germany., Tarradas-Alemany M; Computational Genomics Lab., Department of Genetics, Microbiology and Statistics, Institut de Biomedicina UB (IBUB), Universitat de Barcelona (UB), 08028 Barcelona, Spain., Triebel S; European Virus Bioinformatics Center, 07743 Jena, Germany.; RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, 07743 Jena, Germany., Vakulenko Y; Martsinovsky Institute of Medical Parasitology, Tropical and Vector Borne Diseases, Sechenov First Moscow State Medical University, 119991 Moscow, Russia., Wijesekara RY; Institute for Bioinformatics, University of Medicine Greifswald, Felix-Hausdorff-Str. 8, 17475 Greifswald, Germany., González-Candelas F; European Virus Bioinformatics Center, 07743 Jena, Germany.; Institute for Integrative Systems Biology (I2SysBio), CSIC-Universitat de Valencia, Catedratico Agustin Escardino 9, 46980 Valencia, Spain.; Joint Research Unit 'Infection and Public Health' FISABIO, University of Valencia, 46010 Valencia, Spain., Krautwurst S; RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, 07743 Jena, Germany., Pérez-Cataluña A; European Virus Bioinformatics Center, 07743 Jena, Germany.; VISAFELab, Department of Preservation and Food Safety Technologies, Institute of Agrochemistry and Food Technology, IATA-CSIC, 46980 Valencia, Spain., Randazzo W; European Virus Bioinformatics Center, 07743 Jena, Germany.; VISAFELab, Department of Preservation and Food Safety Technologies, Institute of Agrochemistry and Food Technology, IATA-CSIC, 46980 Valencia, Spain., Sánchez G; European Virus Bioinformatics Center, 07743 Jena, Germany.; VISAFELab, Department of Preservation and Food Safety Technologies, Institute of Agrochemistry and Food Technology, IATA-CSIC, 46980 Valencia, Spain., Marz M; European Virus Bioinformatics Center, 07743 Jena, Germany.; RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, 07743 Jena, Germany.; German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany.; Michael Stifel Center Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.; Cluster of Excellence Balance of the Microverse, Friedrich Schiller University Jena, 07745 Jena, Germany.; Leibniz Institute for Age Research-Fritz Lippman Institute, 07745 Jena, Germany.

Publikováno v: Viruses [Viruses] 2023 Sep 30; Vol. 15 (10). Date of Electronic Publication: 2023 Sep 30.

Precision analysis of mutant U2AF1 activity reveals deployment of stress granules in myeloid malignancies.

Autor: Biancon G; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA. Electronic address: giulia.biancon@yale.edu., Joshi P; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA., Zimmer JT; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT, USA; Institute for Biomolecular Design and Discovery, Yale University, West Haven, CT, USA., Hunck T; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA., Gao Y; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA., Lessard MD; Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA., Courchaine E; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT, USA., Barentine AES; Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA; Department of Biomedical Engineering, Yale University, New Haven, CT, USA., Machyna M; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT, USA., Botti V; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT, USA., Qin A; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA., Gbyli R; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA., Patel A; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA., Song Y; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA; Department of Hematologic Oncology, Sun Yat-Sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangzhou, China., Kiefer L; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT, USA; Department of Neurology, University of California, San Francisco, San Francisco, CA, USA., Viero G; Institute of Biophysics, CNR, Trento, Italy., Neuenkirchen N; Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA; Yale Stem Cell Center, Yale University School of Medicine, New Haven, CT, USA., Lin H; Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA; Yale Stem Cell Center, Yale University School of Medicine, New Haven, CT, USA; Yale Center for RNA Science and Medicine, Yale University School of Medicine, New Haven, CT, USA., Bewersdorf J; Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA; Department of Biomedical Engineering, Yale University, New Haven, CT, USA., Simon MD; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT, USA; Yale Center for RNA Science and Medicine, Yale University School of Medicine, New Haven, CT, USA; Institute for Biomolecular Design and Discovery, Yale University, West Haven, CT, USA., Neugebauer KM; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT, USA; Yale Center for RNA Science and Medicine, Yale University School of Medicine, New Haven, CT, USA., Tebaldi T; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA; Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy. Electronic address: toma.tebaldi@unitn.it., Halene S; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA; Yale Stem Cell Center, Yale University School of Medicine, New Haven, CT, USA; Yale Center for RNA Science and Medicine, Yale University School of Medicine, New Haven, CT, USA; Department of Pathology, Yale University School of Medicine, New Haven, CT, USA. Electronic address: stephanie.halene@yale.edu.

Publikováno v: Molecular cell [Mol Cell] 2022 Mar 17; Vol. 82 (6), pp. 1107-1122.e7.

R-Methylation in Plants: A Key Regulator of Plant Development and Response to the Environment.

Autor: Barré-Villeneuve, Clément^1,2 (AUTHOR) clement.barre-villeneuve@kuleuven.be, Azevedo-Favory, Jacinthe^3,4 (AUTHOR) clement.barre-villeneuve@kuleuven.be

Publikováno v: International Journal of Molecular Sciences. Sep2024, Vol. 25 Issue 18, p9937. 19p.

Biomolecular condensates and disease pathogenesis.

Autor: Ruan K; The First Affiliated Hospital & School of Life Sciences, Ministry of Education Key Laboratory for Membrane-less Organelles & Cellular Dynamics, Hefei National Research Center for Interdisciplinary Sciences at the Microscale, Center for Advanced Interdisciplinary Science and Biomedicine of IHM, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230027, China. kruan@ustc.edu.cn., Bai G; Nanhu Brain-computer Interface Institute, Hangzhou, 311100, China. gebai@zju.edu.cn.; Department of Neurology of Second Affiliated Hospital and School of Brain Science and Brain Medicine, Zhejiang University School of Medicine, Hangzhou, 310058, China. gebai@zju.edu.cn., Fang Y; Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 201210, China. fangys@sioc.ac.cn.; University of Chinese Academy of Sciences, Beijing, 100049, China. fangys@sioc.ac.cn., Li D; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China. lidan2017@sjtu.edu.cn., Li T; Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. litt@hsc.pku.edu.cn., Liu X; CAS Key Laboratory of Regenerative Biology, Joint School of Life Sciences, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, 510530, China. liu_xingguo@gibh.ac.cn.; Joint School of Life Sciences, Guangzhou Medical University, Guangzhou, 510000, China. liu_xingguo@gibh.ac.cn., Lu B; Neurology Department at Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Institutes of Brain Science, School of Life Sciences, Fudan University, Shanghai, 200433, China. luboxun@fudan.edu.cn., Lu Q; Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Bio-X Institutes, Shanghai Jiao Tong University, Shanghai, 200030, China. luqing67@sjtu.edu.cn., Songyang Z; State Key Laboratory of Biocontrol, MOE Key Laboratory of Gene Function and Regulation and Guangzhou Key Laboratory of Healthy Aging Research, School of Life Sciences, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, 510275, China. songyanz@mail.sysu.edu.cn., Sun S; Department of Human Anatomy, Histology and Embryology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China. shuguo@hust.edu.cn., Wang Z; The Second Affiliated Hospital, School of Basic Medical Sciences, Institute of Biomedical Innovation, Jiangxi Medical College, Nanchang University, Nanchang, 330031, China. wz1103@ncu.edu.cn., Zhang X; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, 310024, China. zhangxin@westlake.edu.cn., Zhou W; Department of Immunology and Microbiology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518055, China. zhouw@sustech.edu.cn., Zhang H; National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China. hongzhang@ibp.ac.cn.; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China. hongzhang@ibp.ac.cn.

Publikováno v: Science China. Life sciences [Sci China Life Sci] 2024 Sep; Vol. 67 (9), pp. 1792-1832. Date of Electronic Publication: 2024 Jul 17.