Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Maartje Noordhuis"'
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
GenoScape - example of HPV genotype profiling report and visualization. Number, characteristics and percentage of reads that map to thirteen (13) HPV types, human, bacteria and unknown genomes after profiling reads of the clinical sample TrDNA-456 by
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::32dd912b19c34a7e6090569a5475abad
https://doi.org/10.1158/1940-6207.22534121.v1
https://doi.org/10.1158/1940-6207.22534121.v1
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
Scatter plots of HPV 16-L1 methylation in cervical brush (S7a) and urine ccfDNA (S7b). HPV16-L1 qMSP methylation can discriminate bisulfite treated cervical epithelium DNA and urine ccfDNA from patients with normal cytology, from women with dysplasti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::25fd9cd31e8a6963e66c196441e107c0
https://doi.org/10.1158/1940-6207.22534112.v1
https://doi.org/10.1158/1940-6207.22534112.v1
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
GenoScape - HPV genotype profiling from high-throughput sequencing samples consists of four analytic steps: (1) High-throughput sequencing (454, MiSeq) of HPV TrDNA; (2) Profiling by comparing sequences against several databases such as Human genome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::125c245cc162d352d0a2fd38077a7be3
https://doi.org/10.1158/1940-6207.22534139
https://doi.org/10.1158/1940-6207.22534139
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
Circulating cell free DNA isolation results.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::03ef83def559d7fcd6c6ea7e6313b720
https://doi.org/10.1158/1940-6207.22534088
https://doi.org/10.1158/1940-6207.22534088
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
Primer and probe list of genes used for quantitative Methylation Specific PCR in urine ccfDNA.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::215c56939e7c2916a4e40706fa3ec2fe
https://doi.org/10.1158/1940-6207.22534079
https://doi.org/10.1158/1940-6207.22534079
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
Mapping efficiency of cervical cancer cell lines, head and neck squamous cell carcinoma cell lines and clinical samples to HPV16-L1.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::49f98627d1f62bedea5d69112f0005ed
https://doi.org/10.1158/1940-6207.22534091.v1
https://doi.org/10.1158/1940-6207.22534091.v1
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
Dual Sequence capture of high risk HPV in TrDNA aligned to all high risk HPV types and low risk HPV types from PaVE database.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0d756c07c4aa364844568db8f9b52325
https://doi.org/10.1158/1940-6207.22534103.v1
https://doi.org/10.1158/1940-6207.22534103.v1
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
AlignScape - Pairwise alignment of the HPV16 genome with reads obtained from urine ccfDNA from seven clinical samples: TrDNA-445, TrDNA-455, TrDNA-456, TrDNA-481, TrDNA-504, TrDNA-513, and TrDNA-571. The large-scale HPV DNA server can produce a graph
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::377f32da5870713c200b0388f3064c61
https://doi.org/10.1158/1940-6207.22534115
https://doi.org/10.1158/1940-6207.22534115
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
Patient characteristics.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::36238cff197699aa369d6015e2b08627
https://doi.org/10.1158/1940-6207.22534106
https://doi.org/10.1158/1940-6207.22534106
Autor:
David Sidransky, Liliana Florea, Bruce J. Trock, Josefina Romaguera, Keimari Méndez, José Rodríguez Orengo, Teresa Diaz-Montes, Edgar De Jesus Rodríguez, Carolina Guerrero-Diaz, Marisa Renehan, Gabriela Pérez, Amanda Dziedzic, Maartje Noordhuis, Angelo Vergura, Fahcina Lawson, Francesca Pirini, Oluwasina Folawiyo, Nitesh Turaga, Anne Jedlicka, Blanca L. Valle, Rafael Guerrero-Preston
Reads of the HPV positive cervical cancer, head and neck cancer squamous cell carcinoma (HNSCC) cell lines and clinical samples that mapped uniquely to the reference genomes in the PAVE database.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34657219fbe57a897daf8c54eea408cc
https://doi.org/10.1158/1940-6207.22534094.v1
https://doi.org/10.1158/1940-6207.22534094.v1