Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Maarten van der Sande"'
Autor:
Maarten van der Sande, Siebren Frölich, Tilman Schäfers, Jos G.A. Smits, Rebecca R. Snabel, Sybren Rinzema, Simon J. van Heeringen
Publikováno v:
PeerJ, Vol 11, p e16380 (2023)
Sequencing databases contain enormous amounts of functional genomics data, making them an extensive resource for genome-scale analysis. Reanalyzing publicly available data, and integrating it with new, project-specific data sets, can be invaluable. W
Externí odkaz:
https://doaj.org/article/c85e670403b149f599a9909984f62f87
Autor:
Roelof A. Wester, Lisa van Voorthuijsen, Hannah K. Neikes, Jelmer J. Dijkstra, Lieke A. Lamers, Siebren Frölich, Maarten van der Sande, Colin Logie, Rik G.H. Lindeboom, Michiel Vermeulen
Publikováno v:
iScience, Vol 24, Iss 12, Pp 103444- (2021)
Summary: Retinoic acid (RA) signaling is an important and conserved pathway that regulates cellular proliferation and differentiation. Furthermore, perturbed RA signaling is implicated in cancer initiation and progression. However, the mechanisms by
Externí odkaz:
https://doaj.org/article/ee53bbefaa5245eea4b658c2b77ce466
Publikováno v:
Biochemical Society Transactions, 51, 1-12
Biochemical Society Transactions, 51, 1, pp. 1-12
Biochemical Society Transactions, 51, 1, pp. 1-12
Gene regulatory networks (GRNs) serve as useful abstractions to understand transcriptional dynamics in developmental systems. Computational prediction of GRNs has been successfully applied to genome-wide gene expression measurements with the advent o
Publikováno v:
Bioinformatics, 39, 3, pp. 1-3
Bioinformatics, 39, 1-3
Bioinformatics, 39, 1-3
MotivationAnalyzing a functional genomics experiment, such as ATAC-, ChIP-, or RNA-sequencing, requires genomic resources such as a reference genome assembly and gene annotation. These data can generally be retrieved from different organizations and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::98f8444ae0106d583be47c6ee2c36a4b
https://doi.org/10.1093/bioinformatics/btad119
https://doi.org/10.1093/bioinformatics/btad119
Publikováno v:
Developmental Biology
Developmental Biology, Elsevier, 2020, 460 (2), pp.176-186. ⟨10.1016/j.ydbio.2019.12.012⟩
Developmental Biology, Elsevier, 2020, 460 (2), pp.176-186. ⟨10.1016/j.ydbio.2019.12.012⟩
International audience; In Cnidaria, modes of gastrulation to produce the two body layers vary greatly between species. In the hydrozoan species Clytia hemisphaerica gastrulation involves unipolar ingression of presumptive endoderm cells from an oral
Autor:
Colin Logie, Maarten van der Sande, Michiel Vermeulen, Lisa van Voorthuijsen, Lieke A. Lamers, Jelmer J. Dijkstra, Roelof A. Wester, Siebren Frölich, Hannah K. Neikes, Rik G.H. Lindeboom
Publikováno v:
iScience
iScience, Vol 24, Iss 12, Pp 103444-(2021)
iScience, 24, 12, pp. 1-17
iScience, 24, 1-17
iScience, Vol 24, Iss 12, Pp 103444-(2021)
iScience, 24, 12, pp. 1-17
iScience, 24, 1-17
Summary Retinoic acid (RA) signaling is an important and conserved pathway that regulates cellular proliferation and differentiation. Furthermore, perturbed RA signaling is implicated in cancer initiation and progression. However, the mechanisms by w
Autor:
Siebren Frölich, Gert Jan C. Veenstra, Qingqing Li, Simon J. van Heeringen, Siebe T. van Genesen, Ann Rose Bright, Alexia Grasso, Maarten van der Sande
Publikováno v:
EMBO Journal
During vertebrate gastrulation, mesoderm is induced in pluripotent cells, concomitant with dorsal-ventral patterning and establishing of the dorsal axis. We applied single-cell chromatin accessibility and transcriptome analyses to explore the emergen
Autor:
Maarten van der Sande, Quan Xu, Simon J. van Heeringen, Georgios Georgiou, Huiqing Zhou, Siebren Frölich, Gert Jan C. Veenstra
Publikováno v:
Nucleic Acids Research, 49, 7966-7985
Nucleic Acids Research
Nucleic Acids Research, 49, 14, pp. 7966-7985
Nucleic Acids Research
Nucleic Acids Research, 49, 14, pp. 7966-7985
Proper cell fate determination is largely orchestrated by complex gene regulatory networks centered around transcription factors. However, experimental elucidation of key transcription factors that drive cellular identity is currently often intractab
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::936c764f3721ac86a4609101440896ee
https://doi.org/10.1101/2020.06.05.135798
https://doi.org/10.1101/2020.06.05.135798
Autor:
Sam O. Hofman, Eugenia Puentes, Clemens H. M. Kocken, Joost H.A. Martens, Nacho Aguilo, Frank A. W. Verreck, Liesbeth van Emst, Esteban M. Rodríguez, Krista G. Haanstra, Simone J.C.F.M. Moorlag, Reinout van Crevel, Jorge Domínguez-Andrés, Richard A. W. Vervenne, Maarten van der Sande, Michel P.M. Vierboom, Carlos Martin, Jelle Thole, Claudia C. Sombroek, Charelle Boot, Karin Dijkman, Mihai G. Netea
Publikováno v:
Cell Reports Medicine, 2, 1
Zaguán: Repositorio Digital de la Universidad de Zaragoza
Universidad de Zaragoza
Zaguán. Repositorio Digital de la Universidad de Zaragoza
instname
Cell Rep Med.
Cell Reports Medicine
Cell Reports Medicine, 2
Zaguán: Repositorio Digital de la Universidad de Zaragoza
Universidad de Zaragoza
Zaguán. Repositorio Digital de la Universidad de Zaragoza
instname
Cell Rep Med.
Cell Reports Medicine
Cell Reports Medicine, 2
Summary BCG vaccination can strengthen protection against pathogens through the induction of epigenetic and metabolic reprogramming of innate immune cells, a process called trained immunity. We and others recently demonstrated that mucosal or intrave
Autor:
Eva Kalmar, Tom Aarts, Esther Bosman, Camera Ford, Lisa de Kluijver, Josine Beets, Lisette Veldkamp, Pauline Timmers, Diede Besseling, Joris Koopman, Chuntzu Fan, Enya Berrevoets, Melissa Trotsenburg, Loes Maton, Jill van Remundt, Ela Sari, Lee-Wen Omar, Emiel Beinema, Robbert Winkel, Maarten van der Sanden
Publikováno v:
Heliyon, Vol 8, Iss 1, Pp e08823- (2022)
Collaborative learning is a teaching method that brings together students to discuss a topic important for a given course or curriculum and solve a related problem or create a product. By doing this, learners create knowledge together and gain 21st
Externí odkaz:
https://doaj.org/article/8aef0b23a55245aab407d690e5d36814