Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Maša, Roller"'
Autor:
Javier Mendoza-Revilla, Evan Trop, Liam Gonzalez, Maša Roller, Hugo Dalla-Torre, Bernardo P. de Almeida, Guillaume Richard, Jonathan Caton, Nicolas Lopez Carranza, Marcin Skwark, Alex Laterre, Karim Beguir, Thomas Pierrot, Marie Lopez
Publikováno v:
Communications Biology, Vol 7, Iss 1, Pp 1-18 (2024)
Abstract Significant progress has been made in the field of plant genomics, as demonstrated by the increased use of high-throughput methodologies that enable the characterization of multiple genome-wide molecular phenotypes. These findings have provi
Externí odkaz:
https://doaj.org/article/8af619509e904512a946b50928ccabd2
Autor:
Martina Rimoldi, Ning Wang, Jilin Zhang, Diego Villar, Duncan T. Odom, Jussi Taipale, Paul Flicek, Maša Roller
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-22 (2024)
Abstract Background DNA methylation is an important epigenetic modification which has numerous roles in modulating genome function. Its levels are spatially correlated across the genome, typically high in repressed regions but low in transcription fa
Externí odkaz:
https://doaj.org/article/cf477576d182432584630d6c8a3a968c
Autor:
Maša Roller, Ericca Stamper, Diego Villar, Osagie Izuogu, Fergal Martin, Aisling M. Redmond, Raghavendra Ramachanderan, Louise Harewood, Duncan T. Odom, Paul Flicek
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-43 (2021)
Abstract Background To investigate the mechanisms driving regulatory evolution across tissues, we experimentally mapped promoters, enhancers, and gene expression in the liver, brain, muscle, and testis from ten diverse mammals. Results The regulatory
Externí odkaz:
https://doaj.org/article/c5c4fa97e4e54a19aaaedaf410287007
Autor:
Nathan J. Kenny, Warren R. Francis, Ramón E. Rivera-Vicéns, Ksenia Juravel, Alex de Mendoza, Cristina Díez-Vives, Ryan Lister, Luis A. Bezares-Calderón, Lauren Grombacher, Maša Roller, Lael D. Barlow, Sara Camilli, Joseph F. Ryan, Gert Wörheide, April L. Hill, Ana Riesgo, Sally P. Leys
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Reconstructing the early molecular evolution of animals requires genomic resources for non-bilaterian animals. Here, the authors present the chromosome-level genome of a freshwater sponge together with analyses of its genome architecture, methylation
Externí odkaz:
https://doaj.org/article/8d419b3de9c44cb5aff1f089896aba4c
Autor:
Elissavet Kentepozidou, Sarah J. Aitken, Christine Feig, Klara Stefflova, Ximena Ibarra-Soria, Duncan T. Odom, Maša Roller, Paul Flicek
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-19 (2020)
Abstract Background CTCF binding contributes to the establishment of a higher-order genome structure by demarcating the boundaries of large-scale topologically associating domains (TADs). However, despite the importance and conservation of TADs, the
Externí odkaz:
https://doaj.org/article/291fa0f00ad04f14bfde9e67e60009ab
Autor:
Martina Rimoldi, Ning Wang, Jilin Zhang, Diego Villar, Duncan T. Odom, Jussi Taipale, Paul Flicek, Maša Roller
BackgroundDNA methylation is an important epigenetic modification which has numerous roles in modulating genome function. Its levels are spatially correlated across the genome, typically high in repressed regions but low in transcription factor (TF)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3f4d5be1fa1338c090b190a88eee9382
https://doi.org/10.1101/2022.07.21.500978
https://doi.org/10.1101/2022.07.21.500978
Autor:
Sarah J. Aitken, Christine Feig, Duncan T. Odom, Ximena Ibarra-Soria, Elissavet Kentepozidou, Klara Stefflova, Paul Flicek, Maša Roller
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-19 (2020)
Genome Biology
Genome Biology
Funder: European Molecular Biology Laboratory; doi: http://dx.doi.org/10.13039/100013060
Background: CTCF binding contributes to the establishment of a higher-order genome structure by demarcating the boundaries of large-scale topologically asso
Background: CTCF binding contributes to the establishment of a higher-order genome structure by demarcating the boundaries of large-scale topologically asso
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee5e206c8ab4674b51ddf82e597ab553
Autor:
Maša Roller, Ericca Stamper, Villar, Diego, Osagie Izuogu, Martin, Fergal, Redmond, Aisling M., Raghavendra Ramachanderan, Harewood, Louise, Odom, Duncan T., Flicek, Paul
Additional file 1. Supplementary figures and supplementary Table S1 and S4.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::07f8b3649880f7fabbfe27982b1c7b4f
Autor:
Osagie G. Izuogu, Duncan T. Odom, Maša Roller, Paul Flicek, Ramachanderan R, Diego Villar, Aisling M. Redmond, Louise Harewood, Fergal J. Martin, Stamper E
SUMMARYTo investigate the mechanisms driving regulatory evolution across tissues, we experimentally mapped promoters, enhancers, and gene expression in liver, brain, muscle, and testis from ten diverse mammals. The regulatory landscape around genes i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e084ad5ad0ef08b685763d1e7cfce1a5
https://doi.org/10.1101/2020.05.31.126169
https://doi.org/10.1101/2020.05.31.126169
Autor:
Gert Wörheide, Lauren Grombacher, Nathan J. Kenny, Sara Camilli, Maša Roller, Ana Riesgo, Cristina Díez-Vives, Sally P. Leys, Alex de Mendoza, April L Hill, Joseph F. Ryan, Ksenia Juravel, Lael D. Barlow, Ramón E. Rivera-Vicéns, Ryan Lister, Luis A Bezares-Calderón, Warren R. Francis
Publikováno v:
Kenny, N J, Francis, W R, Rivera-Vicéns, R E, Juravel, K, de Mendoza, A, Díez-Vives, C, Lister, R, Bezares-Calderón, L A, Grombacher, L, Roller, M, Barlow, L D, Camilli, S, Ryan, J F, Wörheide, G, Hill, A L, Riesgo, A & Leys, S P 2020, ' Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri ', Nature Communications, vol. 11, 3676 . https://doi.org/10.1038/s41467-020-17397-w
Nature Communications
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Nature Communications
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
The genomes of non-bilaterian metazoans are key to understanding the molecular basis of early animal evolution. However, a full comprehension of how animal-specific traits, such as nervous systems, arose is hindered by the scarcity and fragmented nat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0bb8ba24e92cfa67b6968eef1a94e86
https://findresearcher.sdu.dk:8443/ws/files/171775551/s41467_020_17397_w.pdf
https://findresearcher.sdu.dk:8443/ws/files/171775551/s41467_020_17397_w.pdf