BioSAXS at European Synchrotron Radiation Facility – Extremely Brilliant Source: BM29 with an upgraded source, detector, robot, sample environment, data collection and analysis software

Autor: Mark D. Tully, Jerome Kieffer, Martha E. Brennich, Raphael Cohen Aberdam, Jean Baptiste Florial, Stephanie Hutin, Markus Oscarsson, Antonia Beteva, Anton Popov, Dihia Moussaoui, Pascal Theveneau, Gergely Papp, Jonathan Gigmes, Florent Cipriani, Andrew McCarthy, Chloe Zubieta, Christoph Mueller-Dieckmann, Gordon Leonard, Petra Pernot

Publikováno v: Journal of Synchrotron Radiation
Journal of Synchrotron Radiation, 2023, 30 (1), pp.258-266. ⟨10.1107/S1600577522011286⟩

As part of its Extremely Brilliant Source (EBS) upgrade project, the ESRF's BM29 BioSAXS beamline was subject to a significant upgrade and refurbishment. In addition to the replacement of the beamline's original bending magnet source by a two-pole wi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7be8a46d9c2e9ac53aabea3c40ceebdc
https://doi.org/10.1107/s1600577522011286

Perspectives on automated composition of workflows in the life sciences

Autor: Robin A. Richardson, Timothy J. Griffin, Hailiang Mei, Jon Ison, Pratik D. Jagtap, A. Amor, Ilkay Altintas, Christopher J. O. Baker, Magnus Palmblad, Szoke Szaniszlo, Tobias Kuhn, Carole Goble, Suzan Verberne, Anna-Lena Lamprecht, Paulos Charonyktakis, Hans Ienasescu, Salvador Capella-Gutierrez, Matúš Kalaš, Michael R. Crusoe, Aswin Verhoeven, Steffen Möller, Katherine Wolstencroft, Yolanda Gil, Vedran Kasalica, Hervé Ménager, Vincent Robert, Stian Soiland-Reyes, Alireza Khanteymoori, Paul Groth, Robert Stevens, Mohammad Sadnan Al Manir, Veit Schwämmle

Publikováno v: F1000Research, 10:897. F1000 Research Ltd.
F1000Research, 10, 1. F1000 Research Ltd.
F1000Research
F1000Research, 2021, 10, pp.897. ⟨10.12688/f1000research.54159.1⟩
Lamprecht, A-L, Palmblad, M, Ison, J, Schwämmle, V S, Sadnan Al Manir, M, Altintas, I, Baker, C J O, Amor, A B H, Capella-Gutierrez, S, Charonyktakis, P, Crusoe, M R, Gil, Y, Goble, C, Griffin, T J, Groth, P, Ienasescu, H, Jagtap, P, Kalaš, M, Kasalica, V, Khanteymoori, A, Kuhn, T, Mei, H, Ménager, H, Möller, S, Richardson, R A, Robert, V, Soiland-Reyes, S, Stevens, R K, Szaniszlo, S, Verberne, S & Verhoeven, A 2021, ' Perspectives on automated composition of workflows in the life sciences ', F1000Research, vol. 10, 897 . https://doi.org/10.12688/f1000research.54159.1
F1000Research, 10
Lamprecht, A L, Palmblad, M, Ison, J, Schwämmle, V, Al Manir, M S, Altintas, I, Baker, C J O, Ben Hadj Amor, A, Capella-Gutierrez, S, Charonyktakis, P, Crusoe, M R, Gil, Y, Goble, C, Griffin, T J, Groth, P, Ienasescu, H, Jagtap, P, Kalaš, M, Kasalica, V, Khanteymoori, A, Kuhn, T, Mei, H, Ménager, H, Möller, S, Richardson, R A, Robert, V, Soiland-Reyes, S, Stevens, R, Szaniszlo, S, Verberne, S, Verhoeven, A & Wolstencroft, K 2021, ' Perspectives on automated composition of workflows in the life sciences ', F1000Research, vol. 10, 897, pp. 1-28 . https://doi.org/10.12688/f1000research.54159.1
F1000Research, 10:897, 1-28. F1000 Research Ltd.
F1000Research, 10. F1000 Research Ltd.
Lamprecht, A-L, Palmblad, M, Ison, J, Schwämmle, V, Al Manir, M S, Altintas, I, Baker, C J O, Ben Hadj Amor, A, Capella-Gutierrez, S, Charonyktakis, P, Crusoe, M R, Gil, Y, Goble, C, Griffin, T J, Groth, P, Ienasescu, H, Jagtap, P, Kalaš, M, Kasalica, V, Khanteymoori, A, Kuhn, T, Mei, H, Ménager, H, Möller, S, Richardson, R A, Robert, V, Soiland-Reyes, S, Stevens, R, Szaniszlo, S, Verberne, S, Verhoeven, A & Wolstencroft, K 2021, ' Perspectives on automated composition of workflows in the life sciences ', F1000Research, vol. 10, 897 . https://doi.org/10.12688/f1000research.54159.1

Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome manual process due to a lack

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17f6f7b52a69eeff5cdcf069034bb015
https://doi.org/10.12688/f1000research.54159.1

SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis

Autor: Pierre Lechat, Laurence Motreff, Amine Ghozlane, Stevenn Volant, Christophe Malabat, Perrine Woringer, Pascal Campagne, Sean Kennedy

Publikováno v: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-15 (2020)
BMC Bioinformatics
BMC Bioinformatics, 2020, 21 (1), pp.345. ⟨10.1186/s12859-020-03666-4⟩
BMC Bioinformatics, BioMed Central, 2020, 21 (1), pp.345. ⟨10.1186/s12859-020-03666-4⟩

Background Comparing the composition of microbial communities among groups of interest (e.g., patients vs healthy individuals) is a central aspect in microbiome research. It typically involves sequencing, data processing, statistical analysis and gra

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4490f3bad7ceb345f5e42f820eb087e6
http://link.springer.com/article/10.1186/s12859-020-03666-4

SCHNAPPs - Single Cell sHiNy APPlication(s)

Autor: Bernd, Jagla, Valentina, Libri, Claudia, Chica, Vincent, Rouilly, Sebastien, Mella, Michel, Puceat, Milena, Hasan

Publikováno v: Journal of Immunological Methods
Journal of Immunological Methods, 2021, 499, pp.113176. ⟨10.1016/j.jim.2021.113176⟩
Journal of Immunological Methods, Elsevier, 2021, 499, pp.113176. ⟨10.1016/j.jim.2021.113176⟩

International audience; Single-cell RNA-sequencing (scRNAseq) experiments are becoming a standard tool for bench-scientists to explore the cellular diversity present in all tissues. Data produced by scRNAseq is technically complex and requires analyt

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::03955fea63d550da2340b9fe6660c56e
https://hal-pasteur.archives-ouvertes.fr/pasteur-03478264

A proof-of-concept augmented reality system in oral and maxillofacial surgery

Autor: Isabelle Barthélémy, Laurent Devoize, Kilian Chandelon, Adrien Bartoli, Nathalie Pham Dang

Publikováno v: Journal of Stomatology, Oral and Maxillofacial Surgery
Journal of Stomatology, Oral and Maxillofacial Surgery, Elsevier Masson, 2021, 122 (4), pp.338-342. ⟨10.1016/j.jormas.2021.05.012⟩

Background The advent of digital medical imaging, medical image analysis and computer vision has opened the surgeon horizons with the possibility to add virtual information to the real operative field. For oral and maxillofacial surgeons, overlaying

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d2fa3ab6b79a5001bfa535b0abc05f42
https://hal.archives-ouvertes.fr/hal-03626159