Zobrazeno 1 - 10
of 197
pro vyhledávání: '"MESH : Genome, Bacterial"'
Autor:
William Rostain, Theophile Grebert, Danylo Vyhovskyi, Paula Thiel Pizarro, Gatwa Tshinsele-Van Bellingen, Lun Cui, David Bikard
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2023, 51 (7), pp.3485-3496. ⟨10.1093/nar/gkad170⟩
Nucleic Acids Research, 2023, 51 (7), pp.3485-3496. ⟨10.1093/nar/gkad170⟩
Genetic tools derived from the Cas9 RNA-guided nuclease are providing essential capabilities to study and engineer bacteria. While the importance of off-target effects was noted early in Cas9’s application to mammalian cells, off-target cleavage by
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5d5a2a90b6a567fdcddb4f2416aa3ddf
https://hal-pasteur.archives-ouvertes.fr/pasteur-04130634/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-04130634/document
Autor:
Hennart Melanie, Guglielmini Julien, Bridel Sébastien, Maiden Martin C.J., Jolley Keith A., Criscuolo Alexis, Brisse Sylvain
Publikováno v:
Molecular Biology and Evolution
Molecular Biology and Evolution, 2022, 39 (7), pp.msac135. ⟨10.1093/molbev/msac135⟩
Molecular Biology and Evolution, 2022, 39 (7), pp.msac135. ⟨10.1093/molbev/msac135⟩
Sublineages within microbial species can differ widely in their ecology and pathogenicity, and their precise definition is important in basic research and industrial or public health applications. Whereas the classification and naming of prokaryotes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::46ffece0de86e719f45d3bec66fe61bf
https://hal-pasteur.archives-ouvertes.fr/pasteur-03759200/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-03759200/document
Autor:
Radu Cojocaru, Anatoly N. Kravetz, Daniela Cristea, Jean Rauzier, Clifford G. Clark, Olivier Gascuel, Marie-Laure Quilici, François-Xavier Weill, Elisabeth Njamkepo, Adriana Simona Ciontea, Monakhova Ev, Maria Damian, Mihaela Oprea, Anna Zhukova
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Nature Communications
Nature Communications, 2020, 11 (1), pp.5347. ⟨10.1038/s41467-020-19185-y⟩
Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.5347. ⟨10.1038/s41467-020-19185-y⟩
Nature Communications
Nature Communications, 2020, 11 (1), pp.5347. ⟨10.1038/s41467-020-19185-y⟩
Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.5347. ⟨10.1038/s41467-020-19185-y⟩
In 1970, the seventh pandemic of cholera (7 P) reached both Africa and Europe. Between 1970 and 2011, several European countries reported cholera outbreaks of a few to more than 2,000 cases. We report here a whole-genome analysis of 1,324 7 P V. chol
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::edf7b808b16fde5b6d2b8312bf564a5c
http://link.springer.com/article/10.1038/s41467-020-19185-y
http://link.springer.com/article/10.1038/s41467-020-19185-y
Publikováno v:
Nature Communications
Nature Communications, 2021, 12 (1), pp.4485. ⟨10.1038/s41467-021-24515-9⟩
Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.4485. ⟨10.1038/s41467-021-24515-9⟩
Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
Nature Communications, 2021, 12 (1), pp.4485. ⟨10.1038/s41467-021-24515-9⟩
Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.4485. ⟨10.1038/s41467-021-24515-9⟩
Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
High-throughput short-read metagenomics has enabled large-scale species-level analysis and functional characterization of microbial communities. Microbiomes often contain multiple strains of the same species, and different strains have been shown to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::ba27e2467ac2e664c444ee403b03bf0d
https://hal.science/hal-03412884/file/s41467-021-24515-9.pdf
https://hal.science/hal-03412884/file/s41467-021-24515-9.pdf
Autor:
Guillaume Dalmasso, Richard Bonnet, Marisa Haenni, Racha Beyrouthy, Jean-Yves Madec, Marie-Hélène Nicolas-Chanoine
Publikováno v:
mBio
mBio, Vol 12, Iss 4 (2021)
mBio, 2021, 12 (4), pp.1-12. ⟨10.1128/mBio.01451-21⟩
mBio, Vol 12, Iss 4 (2021)
mBio, 2021, 12 (4), pp.1-12. ⟨10.1128/mBio.01451-21⟩
International audience; The emergence of multidrug-resistant Escherichia coli ST131 is a major worldwide public health problem in humans. According to the "one health" approach, this study investigated animal reservoirs of ST131, their relationships
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f72d2a597e812ef3f2c85e1a9f865c5
http://europepmc.org/articles/PMC8406181
http://europepmc.org/articles/PMC8406181
Autor:
Andrew Tarupiwa, Anthony M. Smith, Sekesai Mtapuri-Zinyowera, François-Xavier Weill, Portia Manangazira, Tapfumanei Mashe, Prosper Chonzi, Daryl Domman, Isaac K. Phiri, Masindi Ramudzulu, Elisabeth Njamkepo, Kudzai P.E. Masunda
Publikováno v:
New England Journal of Medicine
New England Journal of Medicine, 2020, 383 (7), pp.687-689. ⟨10.1056/NEJMc2004773⟩
New England Journal of Medicine, Massachusetts Medical Society, 2020, 383 (7), pp.687-689. ⟨10.1056/NEJMc2004773⟩
New England Journal of Medicine, 2020, 383 (7), pp.687-689. ⟨10.1056/NEJMc2004773⟩
New England Journal of Medicine, Massachusetts Medical Society, 2020, 383 (7), pp.687-689. ⟨10.1056/NEJMc2004773⟩
Highly Resistant Cholera Outbreak Strain in Zimbabwe Whole genomes of 11 Vibrio cholerae O1 isolates from the 2018–2019 outbreak in Zimbabwe were sequenced to investigate the determinants of antimi...
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7676f8c09bae14fc4c03fbaebc071bde
https://doi.org/10.1056/nejmc2004773
https://doi.org/10.1056/nejmc2004773
Autor:
Claudio Bandi, Xiaoli Cao, Davide Sassera, Ana Cristina Gales, Sion C. Bayliss, Stefano Pongolini, Sylvain Brisse, Ryoichi Saito, Stefano Gaiarsa, Francesco Comandatore, Edward J. Feil, Erika Scaltriti
Publikováno v:
Genome Biology and Evolution
Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2019, 11 (11), pp.3240-3251. ⟨10.1093/gbe/evz236⟩
Genome Biology and Evolution, 2019, 11 (11), pp.3240-3251. ⟨10.1093/gbe/evz236⟩
Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2019, 11 (11), pp.3240-3251. ⟨10.1093/gbe/evz236⟩
Genome Biology and Evolution, 2019, 11 (11), pp.3240-3251. ⟨10.1093/gbe/evz236⟩
Klebsiella pneumoniae (Kp) is one of the most important nosocomial pathogens world-wide, being responsible for frequent hospital outbreaks and causing sepsis and multi-organ infections with a high mortality rate and frequent hospital outbreaks. The m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d49013aa3b3783ae9951f0cebbf5408
http://europepmc.org/articles/PMC6865855
http://europepmc.org/articles/PMC6865855
Autor:
Jean-Philippe Vernadet, Christine Pourcel, David Couvin, Marie Touchon, Gilles Vergnaud, Nicolas Villeriot, Claire Toffano-Nioche
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Nucleic Acids Research, Oxford University Press, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz915⟩
Nucleic Acids Research, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Nucleic Acids Research, Oxford University Press, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz915⟩
In Archaea and Bacteria, the arrays called CRISPRs for ‘clustered regularly interspaced short palindromic repeats’ and the CRISPR associated genes or cas provide adaptive immunity against viruses, plasmids and transposable elements. Short sequenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bbc45025670057b240066b57dff4789b
http://europepmc.org/articles/PMC7145573
http://europepmc.org/articles/PMC7145573
Publikováno v:
Scientific Reports
Scientific Reports, 2021, 11 (1), pp.13011. ⟨10.1038/s41598-021-91737-8⟩
Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)
Scientific Reports, 2021, 11 (1), pp.13011. ⟨10.1038/s41598-021-91737-8⟩
Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)
Previously, we have identified a putative novel rapidly growing Mycobacterium species, referred to as TNTM28, recovered from the sputum of an apparently immunocompetent young man with an underlying pulmonary disease. Here we provide a thorough charac
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::31113678b51dfc80c8075b5271d6664d
https://hal-riip.archives-ouvertes.fr/pasteur-03547033/file/had4.pdf
https://hal-riip.archives-ouvertes.fr/pasteur-03547033/file/had4.pdf
Autor:
Rousset, François, Caballero, José, Piastra-Facon, Florence, Fernández-Rodríguez, Jesús, Clermont, Olivier, Denamur, Erick, Rocha, Eduardo, Bikard, David
Publikováno v:
Nature Microbiology
Nature Microbiology, 2021, 6 (3), pp.301-312. ⟨10.1038/s41564-020-00839-y⟩
Nature Microbiology, Nature Publishing Group, 2021, 6 (3), pp.301-312. ⟨10.1038/s41564-020-00839-y⟩
Nature Microbiology, 2021, 6 (3), pp.301-312. ⟨10.1038/s41564-020-00839-y⟩
Nature Microbiology, Nature Publishing Group, 2021, 6 (3), pp.301-312. ⟨10.1038/s41564-020-00839-y⟩
International audience; Bacteria from the same species can differ widely in their gene content. In E. coli, the set of genes shared by all strains, known as the core genome, represents about half the number of genes present in any strain. While recen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::db9d2f7bd01aed847b5dfdcc191182a3
https://hal-pasteur.archives-ouvertes.fr/pasteur-03264663
https://hal-pasteur.archives-ouvertes.fr/pasteur-03264663