The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

Autor: Gilbert S. Omenn, Lydie Lane, Christopher M. Overall, Charles Pineau, Nicolle H. Packer, Ileana M. Cristea, Cecilia Lindskog, Susan T. Weintraub, Sandra Orchard, Michael H. A. Roehrl, Edouard Nice, Siqi Liu, Nuno Bandeira, Yu-Ju Chen, Tiannan Guo, Ruedi Aebersold, Robert L. Moritz, Eric W. Deutsch

Publikováno v: J Proteome Res
Journal of Proteome Research
Journal of Proteome Research, 2023, 22 (4), pp.1024-1042. ⟨10.1021/acs.jproteome.2c00498⟩

International audience; The 2022 Metrics of the Human Proteome from the HUPO Human Proteome Project (HPP) illustrates that protein expression has now been credibly detected (neXtProt PE1 level) for 18,407 (93.2%) of the 19,750 predicted proteins code

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e66761c62e4ef4d973a5ffb5979673de
https://doi.org/10.1021/acs.jproteome.2c00498

Quantitative Proteomics in Yeast: From bSLIM and Proteome Discoverer Outputs to Graphical Assessment of the Significance of Protein Quantification Scores

Autor: Nicolas Sénécaut, Pierre Poulain, Laurent Lignières, Samuel Terrier, Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, Jean-Michel Camadro

Publikováno v: Yeast Functional Genomics
Yeast Functional Genomics, 2477, Springer US, pp.275-292, 2022, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2257-5_16⟩
Yeast Functional Genomics. Methods and Protocols
Frédéric Devaux. Yeast Functional Genomics. Methods and Protocols, 2477, Springer US, pp.275-292, 2022, Methods in Molecular Biology, 978-1-0716-2256-8. ⟨10.1007/978-1-0716-2257-5_16⟩
Methods in Molecular Biology ISBN: 9781071622568

Simple light isotope metabolic labeling (bSLIM) is an innovative method to accurately quantify differences in protein abundance at the proteome level in standard bottom-up experiments. The quantification process requires computation of the ratio of i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e49103f17f0fd2b1744cb02481288b4a
https://hal.science/hal-03858134

The benefit of combining curcumin, bromelain and harpagophytum to reduce inflammation in osteoarthritic synovial cells

Autor: Julien Pontin, Karim Boumediene, Thierry Conrozier, Catherine Baugé, Sybille Brochard, Benoit Bernay

Publikováno v: BMC Complementary Medicine and Therapies, Vol 21, Iss 1, Pp 1-17 (2021)
BMC Complementary Medicine and Therapies
BMC Complementary Medicine and Therapies, 2021, 21 (1), pp.261. ⟨10.3390/biom11101460⟩

Background Osteoarthritis (OA) is the most common form of arthritis, affecting millions of people worldwide and characterised by joint pain and inflammation. It is a complex disease involving inflammatory factors and affecting the whole joint, includ

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a4909f44668d5b7e600d76c4c47d19be
https://doi.org/10.1186/s12906-021-03435-7

Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra

Autor: Diogo B. Lima, Richard H. Valente, Julia Chamot-Rooke, Mathieu Dupré, Louise U. Kurt, André R.F. Silva, Carolina Alves Nicolau, Marlon D.M. Santos, Paulo C. Carvalho, Valmir C. Barbosa

Publikováno v: Journal of Proteomics
Journal of Proteomics, 2021, 245, pp.104282. ⟨10.1016/j.jprot.2021.104282⟩
Journal of Proteomics, Elsevier, 2021, 245, pp.104282. ⟨10.1016/j.jprot.2021.104282⟩

International audience; In proteomics, the identification of peptides from mass spectral data can be mathematically described as the partitioning of mass spectra into clusters (i.e., groups of spectra derived from the same peptide). The way partition

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9ea2780cbea8e0fd751372f7f826237a
https://hal-pasteur.archives-ouvertes.fr/pasteur-03441752

Metaproteomics to Decipher CF Host-Microbiota Interactions: Overview, Challenges and Future Perspectives

Autor: Hélène Marchandin, Jean Armengaud, Raphaël Chiron, Pauline Hardouin, Lucia Grenga

Publikováno v: Genes
Genes, 2021, 12 (6), pp.892. ⟨10.3390/genes12060892⟩
Genes, Vol 12, Iss 892, p 892 (2021)

International audience; Cystic fibrosis (CF) is a hereditary disease caused by mutations in the CF transmembrane conductance regulator (CFTR) gene, triggering dysfunction of the anion channel in several organs including the lung and gut. The main cau

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c73f78792ffb784f5178a54c4ef382d3
http://europepmc.org/articles/PMC8227082