Stunning 3D chromosomes preserved in thawed mammoths.

Autor: Stone R

Publikováno v: Science (New York, N.Y.) [Science] 2024 Jul 12; Vol. 385 (6705), pp. 130. Date of Electronic Publication: 2024 Jul 11.

Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample.

Autor: Sandoval-Velasco M; Center for Evolutionary Hologenomics, University of Copenhagen, DK-1353 Copenhagen, Denmark., Dudchenko O; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA. Electronic address: olga.dudchenko@bcm.edu., Rodríguez JA; Center for Evolutionary Hologenomics, University of Copenhagen, DK-1353 Copenhagen, Denmark; Centre Nacional d'Anàlisi Genòmica, CNAG, 08028 Barcelona, Spain., Pérez Estrada C; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA., Dehasque M; Centre for Palaeogenetics, SE-106 91 Stockholm, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, 10405 Stockholm, Sweden; Department of Zoology, Stockholm University, SE-106 91 Stockholm, Sweden., Fontsere C; Center for Evolutionary Hologenomics, University of Copenhagen, DK-1353 Copenhagen, Denmark., Mak SST; Center for Evolutionary Hologenomics, University of Copenhagen, DK-1353 Copenhagen, Denmark., Khan R; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA., Oliveira Junior AB; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA., Kalluchi A; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198, USA., Zubillaga Herrera BJ; Department of Physics, Northeastern University, Boston, MA 02115, USA; Center for Theoretical Biological Physics, Northeastern University, Boston, MA 02215, USA., Jeong J; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Roy RP; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA; Departments of Biology and Physics, Texas Southern University, Houston, TX 77004, USA., Christopher I; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Weisz D; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Omer AD; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Batra SS; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Shamim MS; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Durand NC; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., O'Connell B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA; Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR 97239, USA., Roca AL; Department of Animal Sciences and Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA., Plikus MV; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA 92697, USA., Kusliy MA; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia., Romanenko SA; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia., Lemskaya NA; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia., Serdyukova NA; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia., Modina SA; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia., Perelman PL; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia., Kizilova EA; Institute of Cytology and Genetics SB RAS, Novosibirsk 630090, Russia., Baiborodin SI; Institute of Cytology and Genetics SB RAS, Novosibirsk 630090, Russia., Rubtsov NB; Institute of Cytology and Genetics SB RAS, Novosibirsk 630090, Russia., Machol G; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Rath K; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Mahajan R; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA; Department of Biosciences, Rice University, Houston, TX 77005, USA., Kaur P; UWA School of Agriculture and Environment, University of Western Australia, Perth, WA 6009, Australia., Gnirke A; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Garcia-Treviño I; San Antonio Zoo, San Antonio, TX 78212, USA., Coke R; San Antonio Zoo, San Antonio, TX 78212, USA., Flanagan JP; Houston Zoo, Houston, TX 77030, USA., Pletch K; Houston Zoo, Houston, TX 77030, USA., Ruiz-Herrera A; Departament de Biologia Cel·lular, Fisiologia i Immunologia and Genome Integrity and Instability Group, Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Spain., Plotnikov V; Academy of Sciences of Sakha Republic, Yakutsk 677000, Russia., Pavlov IS; Academy of Sciences of Sakha Republic, Yakutsk 677000, Russia., Pavlova NI; Institute of Biological Problems of Cryolitezone SB RAS, Yakutsk 677000, Russia., Protopopov AV; Academy of Sciences of Sakha Republic, Yakutsk 677000, Russia; North-Eastern Federal University, Yakutsk 677027, Russia., Di Pierro M; Department of Physics, Northeastern University, Boston, MA 02115, USA; Center for Theoretical Biological Physics, Northeastern University, Boston, MA 02215, USA., Graphodatsky AS; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia., Lander ES; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Rowley MJ; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198, USA., Wolynes PG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA; Department of Biosciences, Rice University, Houston, TX 77005, USA; Departments of Physics, Astronomy, & Chemistry, Rice University, Houston, TX 77005, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA; Department of Biosciences, Rice University, Houston, TX 77005, USA; Departments of Physics, Astronomy, & Chemistry, Rice University, Houston, TX 77005, USA., Dalén L; Centre for Palaeogenetics, SE-106 91 Stockholm, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, 10405 Stockholm, Sweden; Department of Zoology, Stockholm University, SE-106 91 Stockholm, Sweden., Marti-Renom MA; Centre Nacional d'Anàlisi Genòmica, CNAG, 08028 Barcelona, Spain; Centre for Genomic Regulation, The Barcelona Institute for Science and Technology, 08003 Barcelona, Spain; ICREA, 08010 Barcelona, Spain; Universitat Pompeu Fabra, 08002 Barcelona, Spain. Electronic address: martirenom@cnag.eu., Gilbert MTP; Center for Evolutionary Hologenomics, University of Copenhagen, DK-1353 Copenhagen, Denmark; University Museum NTNU, 7012 Trondheim, Norway. Electronic address: tgilbert@sund.ku.dk., Aiden EL; The Center for Genome Architecture and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Electronic address: erez@erez.com.

Publikováno v: Cell [Cell] 2024 Jul 11; Vol. 187 (14), pp. 3541-3562.e51.

Assessing contemporary Arctic habitat availability for a woolly mammoth proxy.

Autor: Poquérusse J; Colossal Biosciences Inc, Austin, TX, 78701, USA., Brown CL; Colossal Biosciences Inc, Austin, TX, 78701, USA., Gaillard C; School of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, AZ, 86011, USA., Doughty C; School of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, AZ, 86011, USA., Dalén L; Department of Zoology, Stockholm University, Stockholm, Sweden.; Centre for Palaeogenetics, Svante Arrhenius Väg 20C, Stockholm, Sweden.; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden., Gallagher AJ; Beneath The Waves, Boston, MA, 02129, USA., Wooller M; College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Fairbanks, AK, 99775, USA., Zimov N; North-East Science Station, Pacific Institute of Geography, Russian Academy of Sciences, Chersky, Russia., Church GM; Colossal Biosciences Inc, Austin, TX, 78701, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, 02115, USA.; Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA.; Harvard-MIT Program in Health Sciences and Technology, Cambridge, MA, 02139, USA., Lamm B; Colossal Biosciences Inc, Austin, TX, 78701, USA. ben@colossal.com., Hysolli E; Colossal Biosciences Inc, Austin, TX, 78701, USA. eriona@colossal.com.

Publikováno v: Scientific reports [Sci Rep] 2024 Apr 29; Vol. 14 (1), pp. 9804. Date of Electronic Publication: 2024 Apr 29.

Taxonomic and metabolic diversity of Actinomycetota isolated from faeces of a 28,000-year-old mammoth.

Autor: van Bergeijk DA; Department of Microbiology, Immunology and Transplantation (Laboratory of Molecular Bacteriology), KU Leuven, Leuven, Belgium.; Center for Microbiology, VIB, Leuven, Belgium., Augustijn HE; Institute of Biology, Leiden University, Leiden, The Netherlands.; Bioinformatics Group, Wageningen University, Wageningen, The Netherlands., Elsayed SS; Institute of Biology, Leiden University, Leiden, The Netherlands., Willemse J; Institute of Biology, Leiden University, Leiden, The Netherlands., Carrión VJ; Institute of Biology, Leiden University, Leiden, The Netherlands.; Department of Microbiology, University of Málaga, Málaga, Spain.; Department of Microbial Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands., Du C; Institute of Biology, Leiden University, Leiden, The Netherlands., Urem M; Institute of Biology, Leiden University, Leiden, The Netherlands., Grigoreva LV; North-Eastern Federal University, Yakutsk, Russia., Cheprasov MY; North-Eastern Federal University, Yakutsk, Russia., Grigoriev S; North-Eastern Federal University, Yakutsk, Russia., Jansen H; Future Genomics, Leiden, The Netherlands., Wintermans B; Department of Medical Microbiology, Adrz Hospital, Goes, The Netherlands., Budding AE; Inbiome, Amsterdam, Netherlands., Spaink HP; Institute of Biology, Leiden University, Leiden, The Netherlands., Medema MH; Institute of Biology, Leiden University, Leiden, The Netherlands.; Bioinformatics Group, Wageningen University, Wageningen, The Netherlands., van Wezel GP; Institute of Biology, Leiden University, Leiden, The Netherlands.; Department of Microbial Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands.

Publikováno v: Environmental microbiology [Environ Microbiol] 2024 Feb; Vol. 26 (2), pp. e16589.

A female woolly mammoth's lifetime movements end in an ancient Alaskan hunter-gatherer camp.

Autor: Rowe AG; Alaska Stable Isotope Facility, University of Alaska Fairbanks, AK, USA.; Department of Marine Biology, University of Alaska Fairbanks, AK, USA., Bataille CP; Department of Earth and Environmental Sciences, University of Ottawa, Ontario, Canada.; Department of Biology, University of Ottawa, Ontario, Canada., Baleka S; McMaster Ancient DNA Centre, Department of Anthropology, McMaster University, Hamilton, Ontario, Canada., Combs EA; Healy Lake Village Council, Fairbanks, AK, USA., Crass BA; University of Alaska Museum of the North, Fairbanks, AK, USA., Fisher DC; Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA., Ghosh S; Alaska Stable Isotope Facility, University of Alaska Fairbanks, AK, USA., Holmes CE; Department of Anthropology, University of Alaska Fairbanks, AK, USA., Krasinski KE; Department of Anthropology, Adelphi University, Garden City, NY, USA., Lanoë F; Bureau of Applied Research in Anthropology, University of Arizona, Tucson, AZ, USA., Murchie TJ; McMaster Ancient DNA Centre, Department of Anthropology, McMaster University, Hamilton, Ontario, Canada.; Hakai Institute, Heriot Bay, British Columbia, Canada., Poinar H; McMaster Ancient DNA Centre, Department of Anthropology, McMaster University, Hamilton, Ontario, Canada.; Departments of Biochemistry and Biology, McMaster University, Hamilton, Ontario, Canada., Potter B; Department of Anthropology, University of Alaska Fairbanks, AK, USA., Rasic JT; National Park Service, AK, USA., Reuther J; University of Alaska Museum of the North, Fairbanks, AK, USA.; Department of Anthropology, University of Alaska Fairbanks, AK, USA., Smith GM; Department of Anthropology and Geography, University of Alaska Anchorage, AK, USA., Spaleta KJ; Alaska Stable Isotope Facility, University of Alaska Fairbanks, AK, USA., Wygal BT; Department of Anthropology, Adelphi University, Garden City, NY, USA., Wooller MJ; Alaska Stable Isotope Facility, University of Alaska Fairbanks, AK, USA.; Department of Marine Biology, University of Alaska Fairbanks, AK, USA.

Publikováno v: Science advances [Sci Adv] 2024 Jan 19; Vol. 10 (3), pp. eadk0818. Date of Electronic Publication: 2024 Jan 17.