Zobrazeno 1 - 10
of 13
pro vyhledávání: '"M. Consuelo Gazitúa"'
Autor:
Zhi-Ping Zhong, Funing Tian, Simon Roux, M. Consuelo Gazitúa, Natalie E. Solonenko, Yueh-Fen Li, Mary E. Davis, James L. Van Etten, Ellen Mosley-Thompson, Virginia I. Rich, Matthew B. Sullivan, Lonnie G. Thompson
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-23 (2021)
Abstract Background Glacier ice archives information, including microbiology, that helps reveal paleoclimate histories and predict future climate change. Though glacier-ice microbes are studied using culture or amplicon approaches, more challenging m
Externí odkaz:
https://doaj.org/article/a9617b6e1de14164b9d93705305848b3
Autor:
Jiarong Guo, Ben Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Dominguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-13 (2021)
Abstract Background Viruses are a significant player in many biosphere and human ecosystems, but most signals remain “hidden” in metagenomic/metatranscriptomic sequence datasets due to the lack of universal gene markers, database representatives,
Externí odkaz:
https://doaj.org/article/92e6b9c035b842ceb8b91a62353eb189
Autor:
James L. Van Etten, M. Consuelo Gazitúa, Yueh-Fen Li, Matthew B. Sullivan, Funing Tian, Mary E. Davis, Zhi-Ping Zhong, Natalie Solonenko, Lonnie G. Thompson, Simon Roux, Virginia I. Rich, Ellen Mosley-Thompson
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-23 (2021)
Microbiome, vol 9, iss 1
Microbiome
Microbiome, vol 9, iss 1
Microbiome
Background Glacier ice archives information, including microbiology, that helps reveal paleoclimate histories and predict future climate change. Though glacier-ice microbes are studied using culture or amplicon approaches, more challenging metagenomi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c63e439ea1380e4ef50d14fd443a6e3e
https://doaj.org/article/a9617b6e1de14164b9d93705305848b3
https://doaj.org/article/a9617b6e1de14164b9d93705305848b3
Autor:
Akbar Adjie Pratama, Ahmed A. Zayed, Simon Roux, Ben Bolduc, Jiarong Guo, Arvind Varsani, M. Consuelo Gazitúa, Guillermo Dominguez-Huerta, Matthew B. Sullivan, Tom O. Delmont, Dean R. Vik
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-13 (2021)
Microbiome
Microbiome, vol 9, iss 1
Article number: 37
Microbiome
Microbiome, vol 9, iss 1
Article number: 37
BackgroundViruses are a significant player in many biosphere and human ecosystems, but most signals remain “hidden” in metagenomic/metatranscriptomic sequence datasets due to the lack of universal gene markers, database representatives, and insuf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::324c84cbd5848a002dacfdeaa87739a3
https://doaj.org/article/92e6b9c035b842ceb8b91a62353eb189
https://doaj.org/article/92e6b9c035b842ceb8b91a62353eb189
Autor:
Jiarong Guo, Bolduc, Ben, Zayed, Ahmed A., Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O., Pratama, Akbar Adjie, M. Consuelo Gazitúa, Vik, Dean, Sullivan, Matthew B., Roux, Simon
Additional file 1: Figure S1. Recall comparisons of tools on dsDNA phages from different data sources. VirSorter2 consistently has comparable or better performance than existing tools in identifying dsDNA phages. Genome fragments of different lengths
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::744d5cfdce6f0f93a1a1be288b45c6c6
Autor:
Jiarong Guo, Bolduc, Ben, Zayed, Ahmed A., Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O., Pratama, Akbar Adjie, M. Consuelo Gazitúa, Vik, Dean, Sullivan, Matthew B., Roux, Simon
Additional file 2. Case-study: identifying viral contig from a Tara Oceans virome dataset
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c7a57aee07c31be27b95228aeddfa5e
Autor:
Kelly C. Wrighton, Benjamin Bolduc, Rebecca A. Daly, Simon Roux, Michael Shaffer, Pengfei Liu, M. Consuelo Gazitúa, Garrett J. Smith, Sabina Leanti La Rosa, Josué Rodríguez-Ramos, Matthew B. Sullivan, Bridget B. McGivern, Ahmed A. Zayed, Phillip B. Pope, Lindsey M. Solden, Adrienne B. Narrowe, Mikayla A. Borton, Dean R. Vik
Publikováno v:
Nucleic acids research, vol 48, iss 16
Nucleic Acids Research
Nucleic Acids Research
Microbial and viral communities transform the chemistry of Earth’s ecosystems, yet the specific reactions catalyzed by these biological engines are hard to decode due to the absence of a scalable, metabolically resolved, annotation software. Here,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bc4907e1772814d679349d51c606fa1c
https://doi.org/10.1101/2020.06.29.177501
https://doi.org/10.1101/2020.06.29.177501
Autor:
Matthew B. Sullivan, Simon Roux, M. Consuelo Gazitúa, Ann C. Gregory, Benjamin Bolduc, Dean R. Vik, Brittany Widner, Osvaldo Ulloa, Steven J. Hallam, Margaret R. Mulholland
Publikováno v:
The ISME Journal
Viruses play an important role in the ecology and biogeochemistry of marine ecosystems. Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during infection by expressing auxiliary metabolic genes (AMGs) involved in photosy
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c396966f43e82138c1140c4d7b467039
https://pubmed.ncbi.nlm.nih.gov/33199808
https://pubmed.ncbi.nlm.nih.gov/33199808
Autor:
M. Consuelo Gazitúa, Dean R. Vik, Anika Kinkhabwala, Ryan W. Honaker, Cristina Howard-Varona, Zack Hobbs, Natalie Solonenko, Matthew B. Sullivan
Publikováno v:
Microbiology Resource Announcements
We report here the genome sequences and morphological characterizations of phages p000v and p000y, which infect the bacterial pathogen Shiga-toxigenic Escherichia coli O157:H7 and which are potential candidates for phage therapy against such pathogen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e7da407552123ebc86d2cba48e1b182
http://europepmc.org/articles/PMC6256609
http://europepmc.org/articles/PMC6256609
Autor:
Lauren Chittick, Adrian Howard-Varona, Stephen T. Abedon, Matthew B. Sullivan, Anika Kinkhabwala, Jennifer K. Samiec, Yueh-Fen Li, Natalie Solonenko, Cristina Howard-Varona, Aubrey E. Jensen, Dean R. Vik, M. Consuelo Gazitúa, Paige Anderson
Publikováno v:
Antibiotics
Volume 7
Issue 4
Antibiotics, Vol 7, Iss 4, p 101 (2018)
Volume 7
Issue 4
Antibiotics, Vol 7, Iss 4, p 101 (2018)
Hemolytic&ndash
uremic syndrome is a life-threating disease most often associated with Shiga toxin-producing microorganisms like Escherichia coli (STEC), including E. coli O157:H7. Shiga toxin is encoded by resident prophages present within this
uremic syndrome is a life-threating disease most often associated with Shiga toxin-producing microorganisms like Escherichia coli (STEC), including E. coli O157:H7. Shiga toxin is encoded by resident prophages present within this
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1aae05ea1444d0cced42c5db46cbe04
https://doi.org/10.3390/antibiotics7040101
https://doi.org/10.3390/antibiotics7040101