Zobrazeno 1 - 10
of 258
pro vyhledávání: '"M Leggett"'
Publikováno v:
PLoS Pathogens, Vol 20, Iss 5, p e1012182 (2024)
Externí odkaz:
https://doaj.org/article/bc4c7bcf3a2d4064bb9ec5e3e09c960b
Autor:
Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock
Publikováno v:
Data in Brief, Vol 47, Iss , Pp 108990- (2023)
This article presents metagenome-assembled genomes (MAGs) for both eukaryotic and prokaryotic organisms originating from the Arctic and Atlantic oceans, along with gene prediction and functional annotation for MAGs from both domains. Eleven samples f
Externí odkaz:
https://doaj.org/article/06f8e94497c7436ca01fb884a2f2e263
Autor:
Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-21 (2022)
Abstract Background Phytoplankton communities significantly contribute to global biogeochemical cycles of elements and underpin marine food webs. Although their uncultured genomic diversity has been estimated by planetary-scale metagenome sequencing
Externí odkaz:
https://doaj.org/article/0069a965e3764c518b6126ee9e29cc5b
Autor:
Samuel Martin, Darren Heavens, Yuxuan Lan, Samuel Horsfield, Matthew D. Clark, Richard M. Leggett
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-27 (2022)
Abstract Adaptive sampling is a method of software-controlled enrichment unique to nanopore sequencing platforms. To test its potential for enrichment of rarer species within metagenomic samples, we create a synthetic mock community and construct seq
Externí odkaz:
https://doaj.org/article/7130c7c452154df2b29e0de0cafd4150
Autor:
Thomas Mock, William Boulton, John-Paul Balmonte, Kevin Barry, Stefan Bertilsson, Jeff Bowman, Moritz Buck, Gunnar Bratbak, Emelia J Chamberlain, Michael Cunliffe, Jessie Creamean, Oliver Ebenhöh, Sarah Lena Eggers, Allison A Fong, Jessie Gardner, Rolf Gradinger, Mats A Granskog, Charlotte Havermans, Thomas Hill, Clara J M Hoppe, Kerstin Korte, Aud Larsen, Oliver Müller, Anja Nicolaus, Ellen Oldenburg, Ovidiu Popa, Swantje Rogge, Hendrik Schäfer, Katyanne Shoemaker, Pauline Snoeijs-Leijonmalm, Anders Torstensson, Klaus Valentin, Anna Vader, Kerrie Barry, I-M A Chen, Alicia Clum, Alex Copeland, Chris Daum, Emiley Eloe-Fadrosh, Brian Foster, Bryce Foster, Igor V Grigoriev, Marcel Huntemann, Natalia Ivanova, Alan Kuo, Nikos C Kyrpides, Supratim Mukherjee, Krishnaveni Palaniappan, T B K Reddy, Asaf Salamov, Simon Roux, Neha Varghese, Tanja Woyke, Dongying Wu, Richard M Leggett, Vincent Moulton, Katja Metfies
Publikováno v:
PLoS Biology, Vol 20, Iss 10, p e3001835 (2022)
Multiomics approaches need to be applied in the central Arctic Ocean to benchmark biodiversity change and to identify novel species and their genes. As part of MOSAiC, EcoOmics will therefore be essential for conservation and sustainable bioprospecti
Externí odkaz:
https://doaj.org/article/6c164b82d62645998848d52205746fe5
Autor:
Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A. Boulton, Kerrie Barry, Bánk Beszteri, Corina P. D. Brussaard, Alicia Clum, Chris G. Daum, Emiley Eloe-Fadrosh, Allison Fong, Brian Foster, Bryce Foster, Michael Ginzburg, Marcel Huntemann, Natalia N. Ivanova, Nikos C. Kyrpides, Erika Lindquist, Supratim Mukherjee, Krishnaveni Palaniappan, T. B. K. Reddy, Mariam R. Rizkallah, Simon Roux, Klaas Timmermans, Susannah G. Tringe, Willem H. van de Poll, Neha Varghese, Klaus U. Valentin, Timothy M. Lenton, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Latitudinal ecosystem boundaries in the global upper ocean may be driven by many factors. Here the authors investigate pole-to-pole eukaryotic phytoplankton metatranscriptomes, gene co-expression networks, and beta diversity, finding that geographic
Externí odkaz:
https://doaj.org/article/c3e4ea178212400a8e776fbada20340b
Autor:
Samuel Martin, Richard M. Leggett
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-10 (2021)
Abstract Background The analysis of long reads or the assessment of assembly or target capture data often necessitates running alignments against reference genomes or gene sets. The aligner outputs are often parsed automatically by scripts, but many
Externí odkaz:
https://doaj.org/article/b44944c9a49f4e9faf55fa83880f345e
Autor:
Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel S. Brewer
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-15 (2019)
Abstract Background Human tissue is increasingly being whole genome sequenced as we transition into an era of genomic medicine. With this arises the potential to detect sequences originating from microorganisms, including pathogens amid the plethora
Externí odkaz:
https://doaj.org/article/f263cdef29dd40d486347cca46818ba0
Autor:
Richard M. Leggett, Livia V. Patrono, Pablo R. Murcia, Samuel Martin, Mario Caccamo, Martin Ayling
Publikováno v:
Bioinformatics. 39
MotivationThe assembly of contiguous sequence from metagenomic samples presents a particular challenge, due to the presence of multiple species, often closely related, at varying levels of abundance. Capturing diversity within species, for example vi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d5f228dfd7977e30f250992658276cc9
https://doi.org/10.1093/bioinformatics/btad020
https://doi.org/10.1093/bioinformatics/btad020
Autor:
Michael Giolai, Walter Verweij, Neil Pearson, Paul Nicholson, Richard M. Leggett, Matthew D. Clark
BackgroundAll species shed DNA into their environment during life or in death providing an opportunity to monitor biodiversity via its environmental DNA. Biodiversity monitoring using environmental DNA based technologies has become an important tool
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2cc637d8b58514066d12331413554386
https://doi.org/10.1101/2022.12.13.520298
https://doi.org/10.1101/2022.12.13.520298
