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Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics
Autor:
Mückstein, Ulrike, Tafer, Hakim, Bernhart, Stephan H., Hernandez-Rosales, Maribel, Vogel, Jörg, Stadler, Peter F., Hofacker, Ivo L.
The thermodynamics of RNA-RNA interaction consists of two components: the energy necessary to make a potential binding region accessible, i.e., unpaired, and the energy gained from the base pairing of the two interaction partners. We show here that b
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A32007
https://ul.qucosa.de/api/qucosa%3A32007/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A32007/attachment/ATT-0/
Autor:
Bernhart, Stephan H., Tafer, Hakim, Mückstein, Ulrike, Flamm, Christoph, Stadler, Peter F., Hofacker, Ivo L.
Background: RNA has been recognized as a key player in cellular regulation in recent years. In many cases, non-coding RNAs exert their function by binding to other nucleic acids, as in the case of microRNAs and snoRNAs. The specificity of these inter
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A32119
https://ul.qucosa.de/api/qucosa%3A32119/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A32119/attachment/ATT-0/
Autor:
Mückstein, Ulrike, Tafer, Hakim, Hackermüller, Jörg, Bernhart, Stephan H., Stadler, Peter F., Hofacker, Ivo L.
Background: Reliable prediction of RNA–RNA binding energies is crucial, e.g. for the understanding on RNAi, microRNA–mRNA binding and antisense interactions. The thermodynamics of such RNA–RNA interactions can be understood as the sum of two en
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A32006
https://ul.qucosa.de/api/qucosa%3A32006/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A32006/attachment/ATT-0/
Autor:
Stadler Peter F, Flamm Christoph, Mückstein Ulrike, Tafer Hakim, Bernhart Stephan H, Hofacker Ivo L
Publikováno v:
Algorithms for Molecular Biology, Vol 1, Iss 1, p 3 (2006)
Abstract Background RNA has been recognized as a key player in cellular regulation in recent years. In many cases, non-coding RNAs exert their function by binding to other nucleic acids, as in the case of microRNAs and snoRNAs. The specificity of the
Externí odkaz:
https://doaj.org/article/94bf2999f5894179a9d33ffc487a1daf
Akademický článek
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Autor:
Mückstein U; Institute for Theoretical Chemistry, University of Vienna Währingerstrasse 17, A-1090 Vienna, Austria., Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL
Publikováno v:
Bioinformatics (Oxford, England) [Bioinformatics] 2006 May 15; Vol. 22 (10), pp. 1177-82. Date of Electronic Publication: 2006 Jan 29.
Autor:
Bernhart SH; Theoretical Biochemistry Group, Institute for Theoretical Chemistry, University of Vienna, Währingerstrasse 17, Vienna, Austria. berni@tbi.univie.ac.at, Tafer H, Mückstein U, Flamm C, Stadler PF, Hofacker IL
Publikováno v:
Algorithms for molecular biology : AMB [Algorithms Mol Biol] 2006 Mar 16; Vol. 1 (1), pp. 3. Date of Electronic Publication: 2006 Mar 16.